Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1361 100 2e-16 seq268 100 2e-16 seq1421 93.3 3e-14 seq1576 84.2 2e-11 seq813 82.4 6e-11 >seq1361 Length=2134540 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| |||||||| |||||||| || ||| | | | ||||| | || Sbjct 1710177 ATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTGCAAGAGTACGGCCATCTTCAAGCTG 1710118 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| |||| | | |||||||| |||||||||||||| || ||| || Sbjct 1710117 CTTTCCAGCAAATATAAGCCTCTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATCTT 1710058 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||||||| | || |||||||| | || || || | || ||||| || || || Sbjct 1710057 AGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGTGTGATGGTCTTGCCAGT 1709998 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 1709997 TAGAGTTTTCACAAAGATCTGCATA 1709973 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| |||||||| ||||||||||| || | | | ||||| | || Sbjct 1710633 ATGTAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGTGTACGACCATCTTCAAGCTG 1710574 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || ||||| | |||| | |||||| || ||||| ||||| ||||| || || Sbjct 1710573 CTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 1710514 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || |||||||| | |||| || || | ||| ||||| || || | Sbjct 1710513 TGC-CTTCACATTGTCAATGGTATCTGAACTTTCAACCTCCAGGGTGATGGTCTTCCCAG 1710455 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| ||||| || ||||| Sbjct 1710454 TAAGTGTTTTGACAAAGATCTGCAT 1710430 >seq268 Length=6919517 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || || | ||| | ||| || || || ||||| || || ||||||||| | Sbjct 3332040 CCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCGGCT 3332099 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || | ||||| || ||| | ||||| | || || ||| || Sbjct 3332100 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGAGGG 3332159 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||| || ||| || | || || ||||| |||| || Sbjct 3332160 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCAACT 3332219 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| || ||||| || ||||||||||| || || ||||||||| Sbjct 3332220 TCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCATA 3332267 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || ||||||||||| ||| |||| |||| || | ||| Sbjct 3332748 TGCAGAGTAGACTCCTTCTGAATGTTGTAATCCGCTAGGGTTCTGCCGTCGTCGAGCTGT 3332807 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | ||| || ||||| ||||||||||| || || ||| || Sbjct 3332808 TTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTTC 3332867 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||||||| | || || || | || || || ||||| || Sbjct 3332868 GCCTTGACGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGTA 3332927 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || ||||| ||||| |||||||| |||||| Sbjct 3332928 AGGGTTTTCACAAAGATTTGCATGCTTGAAA 3332958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || ||||||||||| ||| |||| |||| || | || Sbjct 3332520 TGGAGTGTTGATTCCTTCTGAATGTTGTAATCCGCTAGGGTTCTGCCGTCGTCGAGCTGC 3332579 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | ||| || ||||| ||||||||||| || || ||| || Sbjct 3332580 TTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTTA 3332639 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || |||||| | | || || || | ||||| || ||||| ||| Sbjct 3332640 GCCTTGACATTGTCGATCGTATCGGAACTCTCGACCTCGAGAGTAATCGTCTTACCAGTC 3332699 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| || || || ||||| Sbjct 3332700 AAGGTTTTCACGAAGATCTGCAT 3332722 >seq1421 Length=9127415 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || ||||||| | ||| |||||||||||||| || || || || ||||||||| Sbjct 1343632 TGCCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGG 1343691 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | ||| || || ||| | |||| | || ||||| | Sbjct 1343692 CGAGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCG 1343751 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || || || ||| ||| ||| || | || ||||| ||| | | || | Sbjct 1343752 GGATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGA 1343811 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||| || ||||| || || ||||| ||||| || ||||| Sbjct 1343812 CCTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1343860 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| || | || | || || ||||||||||| || || || |||||||| ||| Sbjct 1342722 CCACCCCTGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 1342781 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || || | || ||||||||| | || | | |||||||| || Sbjct 1342782 AGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGGTCAGGAGGG 1342841 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| || | || || ||||| |||| || Sbjct 1342842 ATGCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCAATCGTATCCGAGCTTTCAACC 1342901 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||| || || || || || || || || || |||||| Sbjct 1342902 TCCAAGGTAATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATA 1342949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||||| | ||| |||||||||||||| || || || || ||||| ||| | Sbjct 1342950 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCT 1343009 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || | || || || ||| | || | | || ||||| || Sbjct 1343010 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGG 1343069 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || || ||| || || | || || || ||| |||| || Sbjct 1343070 ATTCCTTCTTTGTCCTGGATCTTAGCT-TTCACGTTGTCAATTGTGTCGGAGCTTTCAAC 1343128 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || || || || || || || |||||| Sbjct 1343129 CTCCAAGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATA 1343177 >seq1576 Length=5940209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| ||||| | | ||| || || |||||||| || || || |||||||||||| Sbjct 2986234 TGCCACCCCTCAAACGGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGG 2986293 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || ||| | || || | ||||| || ||| | |||| | || ||||| || Sbjct 2986294 CGAGGGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTG 2986353 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| ||| || | || ||||| ||| | || | Sbjct 2986354 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAA 2986413 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| || || ||||| || || ||||| || || || ||||| Sbjct 2986414 CTTCCAGGGTGATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 2986462 >seq813 Length=2089867 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || | ||| |||||||| || || || |||||||| ||| Sbjct 907432 TGCCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 907373 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | ||||| || ||| | |||| | || ||||| | Sbjct 907372 CGAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGG 907313 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| ||||| || ||| ||| || | || ||||| ||| | || | Sbjct 907312 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCA 907253 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | ||| ||||| || || || || || || || || || |||||| Sbjct 907252 CCTCGAGGGTGATGGTCTTTCCGGTTAGGGTCTTGACGAAGATCTGCATA 907203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362164112746338