Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq268 89.7 4e-13 seq813 84.2 2e-11 >seq268 Length=6919517 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||| | ||||| ||||||||||| ||||| ||||||||||| Sbjct 3332724 CCTCCGCGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCCGCT 3332783 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || |||| || |||||||| || || | || || | |||||| || || Sbjct 3332784 AGGGTTCTGCCGTCGTCGAGCTGTTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGA 3332843 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || ||| ||| || || | | ||| |||||| ||| Sbjct 3332844 ATTCCTTCCTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGACC 3332903 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || || || ||||| || | ||||| ||||| |||||||| Sbjct 3332904 TCGAGAGTGATCGTCTTACCGGTAAGGGTTTTCACAAAGATTTGCAT 3332950 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | ||| | ||||| ||| | || |||||||| || || |||||||||| Sbjct 907660 TTCCACCGCGGAGCCTGAGCACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG 907601 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | |||||||||||||| || || | ||||| ||||||||||| || Sbjct 907600 CAAGAGTGCGGCCATCCTCCAGCTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCTGGGG 907541 Query 18933 GCACGCCCTCTTTGTC 18948 | | || || ||||| Sbjct 907540 GGATTCCTTCCTTGTC 907525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414555530192692