Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq813 95.1 1e-14 seq1576 93.3 4e-14 seq1361 84.2 2e-11 >seq813 Length=2089867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATTTTCCTCCTCGTAAC-CTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||| | | ||| ||||| |||| || ||||| ||||| || || || Sbjct 1896410 TTTAATCATAGTCCCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGAT 1896351 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| ||| ||| | ||||||||| |||||||| ||| |||| || ||||| Sbjct 1896350 GTTGTAATCAGCCAGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTG 1896291 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||| | ||||||||||| Sbjct 1896290 CTGATCAGGGGGGATACCTTCTTTGTC 1896264 >seq1576 Length=5940209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19993 CCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA 20052 ||||| ||||||||| || ||||| || || || |||||||||||| ||| ||| Sbjct 2986019 CCTCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTTCGGCC 2986078 Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 |||||| | || || || || | ||||||||||| ||||| ||| | |||||||| Sbjct 2986079 ATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTT 2986138 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172 ||| |||||| || || | | ||| | ||| |||| || | || || Sbjct 2986139 GTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGAGTGAT 2986198 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||||||| | || |||||||| || ||||| Sbjct 2986199 TGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || ||||| || || || |||||||||||| ||| || ||| || Sbjct 2985797 CACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCATCCTC 2985856 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| ||||| ||| | ||||||||||| Sbjct 2985857 GAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 2985916 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| || || | | ||| || ||| |||| || | ||| || || || Sbjct 2985917 GATTTTTGCCTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTT 2985976 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||| | || |||||||| || ||||| Sbjct 2985977 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 >seq1361 Length=2134540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 |||||| || || |||||||| ||||||||||| | | || | |||||| | || Sbjct 1710633 ATGTAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGTGTACGACCATCTTCAAGCTG 1710574 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| |||| ||||| |||||||| || | |||||| ||||| || || Sbjct 1710573 CTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 1710514 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | ||||| | | ||| | ||| | ||| |||| ||| ||||| || || || Sbjct 1710513 TGCCTTCACATTGTCAATGGTATCTGAACTTTCAACCTCCAGGGTGATGGTCTTCCCAGT 1710454 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||||||||| || ||||| Sbjct 1710453 AAGTGTTTTGACAAAGATCTGCAT 1710430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419569721308458