Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq302 102 7e-17 seq268 102 7e-17 seq1421 95.1 1e-14 seq1361 91.5 1e-13 seq1576 86.0 5e-12 seq1830 82.4 6e-11 >seq302 Length=4569211 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || |||||||| || ||||| ||| |||||||||||||||| ||| || | Sbjct 222438 CTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTCCAGCTGCTTTCCGGCGAA 222497 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | |||||||| ||||||| ||| | | Sbjct 222498 GATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCACATT 222557 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| || ||| ||| | |||||||| || || || || |||||||| Sbjct 222558 GTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCTTCCCCGTCAGGGTTTTCAC 222617 Query 48715 AAAAATCTGCATCGTGTCTTGATCGAAGA 48743 || ||||||||| | | || | ||||| Sbjct 222618 GAAGATCTGCATCTTTGCCTGCTGGAAGA 222646 >seq268 Length=6919517 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| | || || || |||||| |||||||||||||| || Sbjct 3332724 CCTCCGCGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCCGCT 3332783 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||| || ||||| || ||| || | || | ||||||||| || ||| Sbjct 3332784 AGGGTTCTGCCGTCGTCGAGCTGTTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGA 3332843 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||| ||| ||| ||| ||||| | | || |||||||||| ||| Sbjct 3332844 ATTCCTTCCTTATCCTGAATCTTCGCCTTGACGTTGTCG--ATGGTATCGGAGCTCTCGA 3332901 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| || ||||||||||| || ||||| Sbjct 3332902 CCTCGAGAGTGATCGTCTTACCGGTAAGGGTTTTCACAAAGATTTGCAT 3332950 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || ||||||||||| | ||| ||||||| ||||| || ||| || || Sbjct 3332304 TCCTTCTGTATATTGTAATCAGCTAGGGTTCGTCCGTCCTCGAGCTGTTTCCCGGCGAAA 3332363 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||||||| ||| | || |||||||| ||| || ||||| | Sbjct 3332364 ATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTGAATCTTAGCCTTGACATTG 3332423 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || ||||||| ||| ||||| || || || ||||| || | |||||||| Sbjct 3332424 TCGATCGTATCGGAGCTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGGTTTTCACG 3332483 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 3332484 AAGATCTGCATC 3332495 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| | || ||||| ||||| |||||||||||||| || Sbjct 3332496 CCTCCGCGCAGACGGAGCACGAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCCGCT 3332555 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||| || |||||||| ||| || | || | ||||||||| || ||| Sbjct 3332556 AGGGTTCTGCCGTCGTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGA 3332615 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||| ||| ||| || ||||| | | || ||||||| | ||| | Sbjct 3332616 ATTCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGGAACTCTCGACC 3332675 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || || || ||||| || | |||||||| || ||||||||| Sbjct 3332676 TCGAGAGTAATCGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCATC 3332723 >seq1421 Length=9127415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | || |||||||| ||| |||||| || || |||||||| || Sbjct 1343634 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 1343693 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| || ||||| ||| || | || | | |||||| ||| ||| Sbjct 1343694 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 1343753 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||| || ||| || ||||| | | || ||||| |||| | ||| Sbjct 1343754 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAACTCTCGA 1343811 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || |||||||| || ||||||||||| ||||||||| Sbjct 1343812 CCTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCATC 1343861 >seq1361 Length=2134540 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| ||||| || || |||||| ||||||||||| || | Sbjct 1710885 ACCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTG- 1710827 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| ||| | | | ||||| ||||| ||||| | | || |||||||| || || | Sbjct 1710826 CAAGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAG 1710767 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||| || ||| | | | |||||||| | | ||| Sbjct 1710766 GAATGCCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAA 1710707 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 1710706 CCTCCAGTGTGATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCAT 1710658 >seq1576 Length=5940209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | || ||| | ||| |||||||| || |||||| |||||||||||||| ||| Sbjct 2986008 CCACCCCTCAGCCTCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 2986067 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| | || || |||||||| || || | || | | ||||||||| || Sbjct 2986068 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGG 2986127 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||| |||||| ||||| ||||| | ||||| |||| ||| | Sbjct 2986128 ATTCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACC 2986187 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || ||||| || || || ||||| |||||||| Sbjct 2986188 TCGAGAGTGATTGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| || ||||||||||| |||| || ||||||| Sbjct 2986481 CACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTACGGCCGTCCTC 2986540 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | | ||||| || || | | ||||||||| Sbjct 2986541 AAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTG 2986600 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| |||| | ||| ||||| |||||||| Sbjct 2986601 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTC 2986658 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || |||||||| || ||||||||| Sbjct 2986659 TTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 2986691 >seq1830 Length=882674 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCT 48575 ||| ||||| ||||| |||||||| ||||||||| || || || |||| | | |||| Sbjct 346669 CACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGC-AAGTGTCCTCCCATCCT 346727 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| | ||||||||||| || | | |||||||||| Sbjct 346728 CGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCT 346787 Query 48636 TAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | | | || ||||| | |||| || | ||| ||||| Sbjct 346788 GAATCTT-TGCTTTAACGTTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTGATGGTC 346846 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | | || || ||||| ||||||||| Sbjct 346847 TTCCCTATTAAGGTCTTGACAAAGATCTGCATC 346879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421233651991418