Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2848 163 4e-36 seq497 140 5e-29 seq1416 113 7e-21 seq1834 105 1e-18 seq146 96.9 5e-16 seq1125 84.2 3e-12 >seq2848 Length=2937676 Score = 163 bits (180), Expect = 4e-36 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||| ||||| || || || ||||||||||| |||||| Sbjct 889926 CTCCGGGACAACATCCAAGGCATCACGAAGCCGGCCATTCGCCGTCTGGCTCGCCGTGGT 889985 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| |||| || | |||| || |||| ||| | ||| | ||||||||| Sbjct 889986 GGAGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGCGGTGTCCTCAAGATCTTC 890045 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || |||| || ||| | ||| |||||||||||| || ||||| ||| Sbjct 890046 CTCGAGAATGTCATCCGCGACGCTGTTACCTACACCGAGCACGCTCGCCGGAAGACGGTC 890105 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||| | ||||| |||||||||| | || | || ||||||| Sbjct 890106 ACCGCAATGGACGTCGTCTATGCTCTCAAGAGACAGGGCCGTA 890148 Score = 156 bits (172), Expect = 7e-34 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||| ||||| || || || ||||||||||| |||||| Sbjct 943606 CTCCGGGACAACATCCAAGGCATCACGAAGCCGGCCATTCGCCGTCTGGCTCGCCGTGGT 943665 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 943666 GGAGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 943725 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| |||||| | ||| |||||||||||| || ||||| ||| Sbjct 943726 CTTGAGAATGTCATCCGCGATGCTGTTACCTACACCGAGCACGCTCGCCGGAAGACGGTC 943785 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | ||||| |||||||||| | || | || ||||| Sbjct 943786 ACCGCAATGGACGTCGTCTATGCTCTCAAGAGACAGGGCCG 943826 Score = 152 bits (168), Expect = 8e-33 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||||||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 1002495 TCTCCGGGACAACATCCAAGGCATCACGAAGCCGGCCATTCGCCGTCTGGCTCGCCGTGG 1002436 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| |||||| |||| || || |||| || |||| ||| | || | |||||||| Sbjct 1002435 TGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTT 1002376 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| |||||| | ||| || ||||||||| || ||||| || Sbjct 1002375 TCTCGAGAACGTGATCCGCGATGCTGTTACCTACACTGAGCACGCTCGCCGGAAGACGGT 1002316 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | |||||| | || ||||| | || | || ||||| Sbjct 1002315 TACCGCAATGGATGTTGTGTATGCTCTCAAGAGGCAGGGCCG 1002274 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||| ||||| || || || ||||| ||||| |||||| Sbjct 818100 CTCCGGGACAACATCCAAGGCATCACGAAGCCGGCCATTCGCCGTCTTGCTCGCCGTGGT 818159 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 818160 GGAGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 818219 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || ||| | ||| || ||||||||| || ||||| ||| Sbjct 818220 CTCGAGAACGTCATCCGCGACGCTGTTACCTACACTGAGCACGCTCGCCGGAAGACGGTC 818279 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | ||||| |||||||||| | || | || ||||| Sbjct 818280 ACCGCAATGGACGTCGTCTATGCTCTCAAGAGACAGGGCCG 818320 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || || || ||||| ||||| |||||| Sbjct 851764 CTCCGGGACAACATCCAGGGCATCACGAAGCCGGCCATTCGCCGTCTTGCTCGCCGTGGT 851823 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 851824 GGAGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 851883 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || ||| | ||| || ||||||||| || ||||| ||| Sbjct 851884 CTCGAGAACGTCATCCGCGACGCTGTTACCTACACTGAGCACGCTCGCCGGAAGACGGTC 851943 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | ||||| |||||||||| | || | || ||||| Sbjct 851944 ACTGCGATGGACGTCGTCTATGCTCTCAAGAGACAGGGCCG 851984 >seq497 Length=425021 Score = 140 bits (154), Expect = 5e-29 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || || |||||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 135755 TCTCCGGGACAATATCCAAGGCATCACGAAGCCGGCCATTCGCCGTCTCGCTCGCCGTGG 135696 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| |||||| |||| || | |||| || |||| ||| | || | ||||| || Sbjct 135695 TGGAGTGAAGCGTATCTCCGGTCTAATCTACGAGGAGACTCGCGGCGTCCTTAAGATTTT 135636 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| |||||| | ||| || ||||||||| || ||||| || Sbjct 135635 CCTCGAGAACGTGATCCGCGATGCTGTTACCTACACAGAGCACGCTCGCCGGAAGACGGT 135576 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| | ||||| | || ||||| | || | || ||||| Sbjct 135575 CACCGCAATGGACGTTGTGTATGCTCTCAAGAGACAGGGCCG 135534 >seq1416 Length=3519387 Score = 113 bits (124), Expect = 7e-21 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| ||||||||| | ||||| | | || || || Sbjct 71058 GACAACATCCAGGGCATCACCAAGCCCGCTATCCGTAGGCTGGCCAGAAGGGGCGGTGTG 71117 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || || |||| ||||||| | | ||| | |||||||||||| | Sbjct 71118 AAGAGAATCAGCGGCCTGATCTACGAAGAGACCAGAGGCGTTCTCAAGATCTTCCTCGAA 71177 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| ||||| | || || |||||||||| | |||||||| ||| || Sbjct 71178 AATGTTATCCGCGATGCGGTGACGTACACGGAGCACGCTAGGAGGAAGACTGTGACCGCC 71237 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 71238 ATGGATGTGGTCTATGC 71254 >seq1834 Length=5332465 Score = 105 bits (116), Expect = 1e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || ||||||||||| || || |||||||| || || Sbjct 4369154 GCCAAGCGTCACAGGAAGGTC-CTCCGCGATAACATCCAGGGTATAACCAAGCCGGCCAT 4369212 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | ||||| ||| | || || || |||||| || || | | || || |||| Sbjct 4369213 CCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGTCTCATATACGAGGAGAC 4369272 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||||||| || ||| || || ||||| | ||| || || Sbjct 4369273 TCGCGGCGTGTTGAAGATCTTTCTGGAGAATGTGATTAGGGATGCCGTTACCTACACGGA 4369332 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || |||||||| | || ||||| |||||| | || || Sbjct 4369333 GCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATGCCTTGAAAAGGCAGGG 4369392 Score = 104 bits (114), Expect = 4e-18 Identities = 181/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || ||||||||||| || || || ||||| || || Sbjct 4364533 GCGAAGCGTCACAGGAAGGTC-CTCCGCGATAACATCCAGGGTATAACTAAGCCGGCCAT 4364591 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| ||| | || || || |||||| || || | | || || |||| Sbjct 4364592 TCGTAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGCGGCCTCATATACGAGGAGAC 4364651 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||||||||||||| || ||| || || ||||| | ||| ||||| Sbjct 4364652 TCGCGGCGTTTTGAAGATCTTTCTGGAGAATGTGATTAGGGATGCCGTTACCTACACCGA 4364711 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || |||||||| | || ||||| ||||| | || || Sbjct 4364712 GCACGCCCGCCGCAAGACGGTTACTGCCATGGATGTGGTGTATGCGCTGAAAAGGCAGGG 4364771 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 4364772 TCGGACTCTTTACGGGTTCGG 4364792 Score = 89.7 bits (98), Expect = 8e-14 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || || || || |||||||| || ||||||||||| || || Sbjct 4674610 GCCAAGCGTCACAGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 4674668 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| | || || || |||||| |||| || | |||| || |||| Sbjct 4674669 CCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 4674728 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | |||||||||||| | | ||| || ||||| | ||| || || Sbjct 4674729 CAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCGGTGACCTACACGGA 4674788 Query 16612 GCACGC 16617 |||||| Sbjct 4674789 GCACGC 4674794 >seq146 Length=4357719 Score = 96.9 bits (106), Expect = 5e-16 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||| ||||| || || || |||||||||||| | || Sbjct 170262 CTTCGCGACAACATCCAGGGGATCACGAAGCCGGCCATTCGCCGTCTGGCTCGTAGAGGA 170321 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || | |||| || |||| | | || | ||||||||| Sbjct 170322 GGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACCAGGGGAGTCCTCAAGATCTTC 170381 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || ||| || || | || || ||||||||| | ||||| || Sbjct 170382 CTCGAGAATGTGATCAGAGACGCCGTGACATACACTGAGCACGCTCGGAGGAAGACCGTG 170441 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || | ||||| ||||||| || Sbjct 170442 ACGGCGATGGACGTCGTCTACGC 170464 >seq1125 Length=1560666 Score = 84.2 bits (92), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| || || || ||||||||||| |||| ||||| || || |||||||||||||| Sbjct 56761 AGATC-CTCCGGGACAACATCCAAGGTATCATGAAGCCGGCCATTCGTCGTCTGGCTCGC 56703 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGG 16533 |||||||||| |||||| |||| || Sbjct 56702 GGTGGTGGAGTGAAGCGTATCTCCGG 56677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072074898674