Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3418 536 3e-148 seq2653 208 2e-49 seq2647 208 2e-49 seq3417 197 4e-46 seq1564 165 2e-36 >seq3418 Length=161897 Score = 536 bits (594), Expect = 3e-148 Identities = 716/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1559 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1500 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| | ||||| || || || || Sbjct 1499 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCT 1440 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1439 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAAT 1380 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| ||||| || | |||| | || || ||||| | |||||||| || || Sbjct 1379 ATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAATT 1320 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| |||||||||||||||||||| ||| |||| |||| Sbjct 1319 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 1261 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1260 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1201 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || ||||| |||| || | |||| ||| || Sbjct 1200 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGC 1141 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 || ||||| | | |||||| | || || || |||||| ||||||||||||||| || | Sbjct 1140 AGT-TTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1082 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| || || ||| | |||||||| || || ||||| || |||||||| | Sbjct 1081 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 1022 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || || ||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 1021 CATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 962 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| ||||| | |||| |||||| || || ||| ||| ||| | | Sbjct 961 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 902 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 901 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 842 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| || |||||||| ||||| ||||| | | Sbjct 841 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAG 782 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || ||| |||||||||| |||| Sbjct 781 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCA 722 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 |||| || ||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 721 ACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA-GGCCGTGTAATTAAT 663 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 662 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 603 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||||||| || || ||||| Sbjct 602 GCTCATAACTTCCCTCTAGACCTAGCT 576 >seq2653 Length=4899193 Score = 208 bits (230), Expect = 2e-49 Identities = 277/382 (73%), Gaps = 11/382 (3%) Strand=Plus/Plus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGG 19732 || ||||| |||| || | |||| ||| || || ||||| | | |||||| | || Sbjct 3225443 GTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGT-TTTCTTGATCTACCCAATCGG 3225501 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 || || |||||| ||||||||||||||| || |||||||||||||| || || ||| | Sbjct 3225502 TCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA-TTCATGAT 3225560 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTA--------TGCATCCGTTCCACATGCTCGGT 19844 |||||||| || | ||||| || |||| |||| || || || ||| | || Sbjct 3225561 TGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCATATGTTAGGC 3225620 Query 19845 GTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCC 19904 || ||||| |||||||| || || || ||| ||||||||| || ||||| ||||| Sbjct 3225621 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCT 3225680 Query 19905 TCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAA 19964 | ||||||||||| || || ||| || ||| | || || | ||||| ||| Sbjct 3225681 AGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAGATTCGGTCAA 3225740 Query 19965 GATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAA 20024 || ||||| || |||||||| || ||||| || || || ||||| ||||||| |||||| Sbjct 3225741 GAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAA 3225800 Query 20025 TATGCTTCTTTCAATAATTCTC 20046 |||||| |||||| || |||| Sbjct 3225801 TATGCTAGTTTCAACAACTCTC 3225822 >seq2647 Length=4788780 Score = 208 bits (230), Expect = 2e-49 Identities = 296/414 (71%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 19708 CTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 |||| ||||| | |||||| | || || || |||||| ||||||||||||||| || | Sbjct 734482 CTGT-TTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 734424 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||| ||||||| || || ||| | |||||||| | || ||||| || |||||||| | Sbjct 734423 TCTCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACC 734364 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | ||||| ||| | || || ||| | |||||||| || || || ||| || |||||| | Sbjct 734363 CATTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATG 734304 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| | ||| | |||| |||||| | | ||| ||| ||| | | Sbjct 734303 GTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAG 734244 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || || ||||| ||||| ||||| | |||||||| || | || || || || |||| Sbjct 734243 GTTACAAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTTTG 734185 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || |||||||| |||||| || |||||||| ||||| ||||| | | Sbjct 734184 GCCGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAG 734125 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGG 20121 || ||| | || | || || ||| | || | | || ||| |||||| || Sbjct 734124 CTGCTTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAGGG 734071 Score = 100 bits (110), Expect = 8e-17 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 20108 AATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-G 20166 |||| | |||||||| |||||||| || ||||| || || ||||| || ||| ||||| | Sbjct 733763 AATCAGTACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAG 733704 Query 20167 TCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAAATAGAGCTAACCTCGGATTT 20225 |||| | | |||| || ||||||||| | ||||| | |||||||| || | Sbjct 733703 TCAAGGCCGTG-TAATTAATACTTGGGCTGATATCATTAACCAT-GCTAACCTTGGTATG 733646 Query 20226 GAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||| || | ||||||| ||||||||| || || ||||| Sbjct 733645 GAAGTTATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGCT 733598 >seq3417 Length=265768 Score = 197 bits (218), Expect = 4e-46 Identities = 234/317 (74%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 19957 TCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGA 20016 |||| ||||| ||| | || |||||||| || ||||| || || ||||| |||||| Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 20017 TATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCC 20076 | || ||||||||| |||||| || |||||||| ||||| ||||| | ||| ||| | Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 20077 CCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATG 20136 | || || || || ||| | || | | || ||| |||||||||| |||||||| |||| Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 20137 GTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTG 20196 ||| || || ||||| || ||||||||| | | || |||| || ||||||| Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTG 155971 Query 20197 ATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACT 20256 || | | || | |||||||| || | ||||||||||| || || ||||||||||||| Sbjct 155970 ATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 155911 Query 20257 TCCCACTTGATTTAGCT 20273 |||| || || ||||| Sbjct 155910 TCCCTCTAGACCTAGCT 155894 >seq1564 Length=1404973 Score = 165 bits (182), Expect = 2e-36 Identities = 262/373 (70%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 19332 GGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTC 19391 || |||||||| || | ||||| ||| ||| | | || ||| || ||||| | Sbjct 141179 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATA 141120 Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 ||||| || || || || || |||||||| ||||| || ||||| || ||||| || || Sbjct 141119 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 141060 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGA 19511 || | ||||| ||||||||||| ||||| || | |||| | || || ||| | Sbjct 141059 CTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAAGT 141000 Query 19512 CTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGG 19570 | |||||||| || || |||||||| |||| | | ||||| ||||||||||||||||| Sbjct 140999 TTACACTTTTACCCAATTTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGG 140941 Query 19571 TCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACA 19630 ||| ||| |||| |||| | ||||||||| | || ||||| ||| ||| | | Sbjct 140940 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 140881 Query 19631 GTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690 ||||||||| || | | | || ||| | || ||||| || ||||| |||| || Sbjct 140880 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCC 140821 Query 19691 ACTATCAGCAGCT 19703 | |||| ||| Sbjct 140820 TGTTGCAGCTGCT 140808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144435737296008