Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3418 526 4e-144 seq3417 196 8e-45 seq2653 190 3e-43 seq1564 176 7e-39 seq2647 170 3e-37 >seq3418 Length=161897 Score = 526 bits (582), Expect = 4e-144 Identities = 690/955 (72%), Gaps = 3/955 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 1519 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 1460 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 |||| ||||| || || ||||| || ||||| || || || |||||||| || |||| | Sbjct 1459 TAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1400 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | || || ||||| || ||||||||||| || |||| |||| || || | Sbjct 1399 CTCTGCTTTACGGAAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAG 1340 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||||||||| || || || |||||||| ||| | ||||||| ||| | ||||| || | Sbjct 1339 GTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCG 1280 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 1279 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 1220 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | |||||||| |||||||| |||||| || ||||| | Sbjct 1219 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTC 1160 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||| || ||| | | |||||| |||||||||| || || | Sbjct 1159 CTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTG 1100 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || || || || ||||| |||||| | |||||||| || || | Sbjct 1099 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGC 1040 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 | ||||| |||||||||||||| |||||| ||| || || ||| | ||||| || | Sbjct 1039 ACAACATTCTTATGCACCCATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 980 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT 212209 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 979 TATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 920 Query 212210 TAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTG 212269 || || ||| | ||||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 919 ATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 860 Query 212270 CTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAA 212329 |||| ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 859 CTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 800 Query 212330 GTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTA 212389 |||||||||||| | || | |||||||| | || | ||||| || || | |||| Sbjct 799 CGTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTA 740 Query 212390 TCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCAT 212449 || |||| ||||||||||||||||| || ||||| ||||||||||| || |||||| Sbjct 739 TCAGCACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 680 Query 212450 CAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 ||| || || |||||||| |||| | ||||| | || |||||||||||||||| Sbjct 679 AAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAG 620 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 ||||||| ||| | ||||| || |||||||| || ||| ||| |||||| ||| Sbjct 619 TTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 568 >seq3417 Length=265768 Score = 196 bits (216), Expect = 8e-45 Identities = 233/316 (74%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 212237 TCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTA 212296 |||| ||||| ||| | || ||||| ||||| ||||| ||| || || || || | | Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 212297 TCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGC 212356 ||||||| ||||| ||||||||| | |||||||||||| | || | |||| Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 212357 CTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATG 212416 |||| | || | ||||| || || | |||||| |||| ||||||||||||||||||| Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 212417 GATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTG 212476 | | || ||||||||||| || |||||| ||| || || ||||||| || Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTG 155971 Query 212477 ATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACT 212536 || | ||||| | || ||||||||||||||||||||||| ||| | ||||| || |||| Sbjct 155970 ATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 155911 Query 212537 TCCCACTTGACTTAGC 212552 |||| || ||| |||| Sbjct 155910 TCCCTCTAGACCTAGC 155895 >seq2653 Length=4899193 Score = 190 bits (210), Expect = 3e-43 Identities = 275/388 (71%), Gaps = 9/388 (2%) Strand=Plus/Plus Query 211943 CTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTT 212002 ||||||| |||||| || ||||| ||||| |||| ||| ||| || ||| | | | Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCT 3225491 Query 212003 ACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCA 212062 ||||| |||||||||| || || || ||||||||| |||| || || || || |||| Sbjct 3225492 ACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 3225551 Query 212063 ACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTA--------TGCACCCATTCCA 212114 | |||||| | |||||||| || | || ||||| |||| |||||||||| || Sbjct 3225552 A-TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCA 3225610 Query 212115 TATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCT 212174 |||| ||| || || ||| | ||||| || | ||||| ||||||||| ||||| | Sbjct 3225611 TATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 3225670 Query 212175 TGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAA 212234 || || ||| | ||| |||||||| | || | ||| | ||||||| Sbjct 3225671 GGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAG 3225730 Query 212235 GTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACT 212294 ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || || | Sbjct 3225731 ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATT 3225790 Query 212295 TATCTTCCAGTATGCATCATTCAACAAC 212322 ||||| || ||||| ||||||||| Sbjct 3225791 GATCTTTCAATATGCTAGTTTCAACAAC 3225818 >seq1564 Length=1404973 Score = 176 bits (194), Expect = 7e-39 Identities = 268/382 (70%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 141181 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 141122 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 |||| ||||| || || ||||| || ||||| || || || |||||||| || |||| | Sbjct 141121 TAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 141062 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | || || ||||| || ||||||||||| || |||| |||| || || Sbjct 141061 CTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAA 141002 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||||||||| || || || |||||||| ||| | ||||||| ||| | ||||| || | Sbjct 141001 GTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCG 140942 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 140941 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 140882 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | |||||||| |||||||| |||||| || ||||| | Sbjct 140881 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTC 140822 Query 211970 CTGTATCAGCAGCTTTCGCTGT 211991 |||| |||| ||| ||| || Sbjct 140821 CTGTTGCAGCTGCTACCGCAGT 140800 >seq2647 Length=4788780 Score = 170 bits (188), Expect = 3e-37 Identities = 288/411 (70%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| || | |||||| |||| ||||| || || || ||||||||| |||| | Sbjct 734482 CTGTTTTC-TTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 734424 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || | || ||||| |||||| | |||||||| | || || ||||| |||||||||| Sbjct 734423 TCTCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACC 734364 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 ||||||||||| ||| || || || | ||||| || | ||||| || |||||| | Sbjct 734363 CATTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATG 734304 Query 212168 GTTCTCTTGTTACATCTTCACTT--ATCCGTGAAACCACTGGTTTAGATTCACAGAACTA 212225 |||| |||| || || | | || ||| | ||||||| || || ||| | Sbjct 734303 GTTC-CTTGGTA-ATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGA 734246 Query 212226 TGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTT 212285 |||||||| ||||| ||||| ||||| | ||||| ||||| | || ||||| || || Sbjct 734245 AGGTTACAAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTT 734187 Query 212286 CGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCT 212345 || || | |||||| | ||||| ||||||||| | |||||||||||| | Sbjct 734186 TGGCCGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTT 734127 Query 212346 CGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCAC 212396 || | |||| ||| || | ||||| || || | |||||| |||| Sbjct 734126 AGCTGCTTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGTATCAGCAC 734076 Score = 120 bits (132), Expect = 5e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 ||| | || ||||||||||||||||| || ||||| ||||||||||| || ||||| Sbjct 733762 ATCAGTACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGT 733703 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 ||| || || |||||||| |||| | ||||| || ||||||||||||||| Sbjct 733702 CAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAA 733643 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| ||| | ||||| | |||||||| || ||| |||| Sbjct 733642 GTTATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGC 733599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807520697204080