Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq268 96.9 3e-15 seq1576 86.0 6e-12 seq1361 86.0 6e-12 seq688 86.0 6e-12 >seq268 Length=6919517 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | ||||| ||| | |||||| | ||| | ||| Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || |||||| || |||||||| || ||||||||||| Sbjct 3332206 GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 3332147 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || || ||||| ||||| |||| ||| | | ||| || || Sbjct 3332146 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 3332087 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || |||||||| || | |||||||| ||||| || Sbjct 3332086 ATCCAGAAAGAATCAACGCTGCATCTGGTTCTGAGGCT 3332049 >seq1576 Length=5940209 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | ||||| |||| | ||| | Sbjct 2986234 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACAATCACTCTCGAGGTGGAAAGCTCC 2986175 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||| || ||||||||||| || || || ||||| Sbjct 2986174 GACACCATTGACAACGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2986115 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || || || |||||||||| ||| | | ||| || ||| Sbjct 2986114 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTGGCCGATTACAAC 2986055 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| | ||| |||| ||||| || || || || Sbjct 2986054 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGAGGCTGAGGGGTGG 2986008 >seq1361 Length=2134540 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| |||||| | ||||| || | |||||| | || | ||| ||| Sbjct 1710430 ATGCAGATCTTTGTCAAAACACTTACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCA 1710489 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || ||||| || | || || |||||| ||||| ||||| || ||||| ||| Sbjct 1710490 ---GATACCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGAT 1710546 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGC-GACT 26943 |||||||| || |||| | || || || || ||||||| | | | || | || || | Sbjct 1710547 CAACAAAGGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTT--GCTGATT 1710604 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||| |||||||| || || | ||||| ||||| Sbjct 1710605 ACAACATCCAAAAAGAGTCCACCCTACATCTTGTCCT 1710641 >seq688 Length=8729492 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| || || | || || || |||||||| |||| | ||||| Sbjct 4649450 AAAATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATCACCCTCGAGGTTGAATCG 4649509 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || || |||||| ||||| ||||| || || || || Sbjct 4649510 TCGGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 4649569 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || |||||| || ||||| || | | | | || |||||| Sbjct 4649570 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTAC 4649629 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || |||| || || || Sbjct 4649630 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCT 4649664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478641949148960