Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq656 104 6e-17 seq418 100 7e-16 seq3069 87.8 5e-12 >seq656 Length=2434700 Score = 104 bits (114), Expect = 6e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| || ||| ||| || || || | ||| || || ||| | Sbjct 849351 TGCTTTCTTATCTGCATGAAAGAGGATAGCATTGATGGCATATATGATACTCTCAAGGAG 849292 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| | ||| ||| ||||| ||||||||||| || | |||||| | ||||| Sbjct 849291 TGTGCTGTAATTAGCAAATCAGCAGGAGGAATTGGTGTTTCTGTGCACAATATCCGTGCT 849232 Query 363726 ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | ||||| ||||| || || | |||| | || ||||| | ||||| ||||| | Sbjct 849231 ACTG-GGAGTTATATTCGTGGAACAAATGGGACA-TCCAATGGAATTGTTCCTATGCTAC 849174 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||||| | ||||||| | || || |||||||| || || || | ||||| Sbjct 849173 GTGTGTTCAATGATACTGCACGATATGTTGACCAGGGGGGTGGCAAAAGAAAAGG 849119 >seq418 Length=2515040 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| |||||||| | ||| || || ||| | |||||| | ||| | Sbjct 418975 ATGAAAGATGATAGCATTGAGGGTATATATGATACTCTAAAGGAGTGTGCTGTAATTAGC 419034 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| || || ||||||||||| || | || || | ||||| || | |||||||| Sbjct 419035 AAGTCAGCGGGTGGAATTGGTGTCTCTGTGCATAACATCCGTGCTACTG-GGAGTTACAT 419093 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || || ||| || ||||| | ||||| ||||| |||||||| | | || Sbjct 419094 TCGTGGGACGAATGGAACATCCAATGGAATTGTTCCAATGCTACGTGTGTTCAATGACAC 419153 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || || || |||||||| || || || | ||||| Sbjct 419154 TGCAAGATATGTTGACCAGGGAGGTGGCAAAAGAAAAGG 419192 >seq3069 Length=10854949 Score = 87.8 bits (96), Expect = 5e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 111692 TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATC 111751 || ||| ||| ||||||||||| | | || || || ||||||||||| || || || Sbjct 10263840 TCCTATTTGC-AGTTTTATGTAGCCAATGGTGAACTATCTTGCCAAATGTACCAACGCTC 10263782 Query 111752 TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTT 111811 |||||| || |||||||| || |||||||| |||||| |||| | || || || ||| | Sbjct 10263781 TGCTGACATGGGTCTTGGAGTGCCGTTTAACATTGCATCTTACTCCCTTCTGACATGCAT 10263722 Query 111812 AATCGCTCATTTT 111824 || || ||| || Sbjct 10263721 GATTGCCCATGTT 10263709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303296522072876