Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1421 107 2e-18 seq1576 104 2e-17 seq268 95.1 1e-14 seq813 89.7 4e-13 seq688 82.4 7e-11 >seq1421 Length=9127415 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || | ||||| |||| |||||| | Sbjct 1343860 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACTATTACTCTCGAGGTCGAGAGTTCC 1343801 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || || ||||| || || || || Sbjct 1343800 GACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGACCAG 1343741 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||||||||| || | | | | || |||||| || Sbjct 1343740 CAGAGGCTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGTACCCTCGCCGATTACAAT 1343681 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || ||||||| || | ||||||| ||||| Sbjct 1343680 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGATTGAGGGGAGG 1343634 >seq1576 Length=5940209 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || || |||| || || | | Sbjct 2986234 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACAATCACTCTCGAGGTGGAAAGCTCC 2986175 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||| || ||||||||||| || || || ||||| Sbjct 2986174 GACACCATTGACAACGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2986115 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| |||||||||| | ||| | | |||||| ||| Sbjct 2986114 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTGGCCGATTACAAC 2986055 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| ||||||| ||| | || |||| || || Sbjct 2986054 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGAGGCTGAGGGGTGG 2986008 >seq268 Length=6919517 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | ||||| ||| | || ||| | ||||| || | Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || |||||| || |||||||| || ||||||||||| Sbjct 3332206 GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 3332147 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || || || || ||||| |||| | ||| | | |||||| || Sbjct 3332146 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 3332087 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 3332086 ATCCAGAAAGAATCAAC 3332070 >seq813 Length=2089867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| ||||| | || ||| |||| || ||| | | Sbjct 907204 ATGCAGATCTTCGTCAAGACCCTAACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCC 907263 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 907264 GACACCATTGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCGGACCAG 907323 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| || || ||||| || | | | | | || ||| || ||| Sbjct 907324 CAGAGGCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCCTCGCCGACTACAAC 907383 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 907384 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTTTGAGAGGAGG 907430 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| | || ||| |||| || ||| | Sbjct 906976 ATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACTATCACCCTCGAGGTGGAGAGCTCT 907035 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 907036 GACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCGGACCAG 907095 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | || ||| || || ||||| || | | | | || ||| || ||| Sbjct 907096 CAGAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGGCGTACCCTCGCCGACTACAAC 907155 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | || || ||| Sbjct 907156 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 907185 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/151 (73%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 24078 ATTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGC 24135 |||||| ||||||||||| || || || ||||| ||||||||||||| | ||||| | Sbjct 1896256 ATTACCAGGACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAAC 1896315 Query 24136 AACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATT 24195 | | ||||||| || | | ||||| ||||| || || ||||| ||| |||| Sbjct 1896316 AGTTGGAAGATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACC 1896375 Query 24196 TAGTGTTAAGATTGAGAGGA-GGACTATAAT 24225 | || || ||| | || ||| ||||||| || Sbjct 1896376 TGGTTTTGAGACTTAGGGGAGGGACTATGAT 1896406 >seq688 Length=8729492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || | || || || |||| ||| |||| || || | Sbjct 4649450 AAAATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATCACCCTCGAGGTTGAATCG 4649509 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || || |||||| ||||| |||||||| || || || Sbjct 4649510 TCGGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 4649569 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||||||||| ||||| || | | | | | || ||| || Sbjct 4649570 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTAC 4649629 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 4649630 AACATCCAGAAGGAGTCCAC 4649649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429918090209790