Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq302 104 2e-17 seq688 100 2e-16 seq813 96.9 3e-15 seq1421 95.1 1e-14 seq1361 95.1 1e-14 seq1830 84.2 2e-11 >seq302 Length=4569211 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||| || || ||||||||||| |||| ||| ||||| Sbjct 222418 AGCACCAGGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCC 222477 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || |||||||| ||||| || | ||||| ||||| Sbjct 222478 TCCAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCT 222537 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | |||||| | | | | |||||| || ||| |||| ||| ||||| Sbjct 222538 TGAATTTTCGCCTTCACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTC 222597 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| ||||| || || |||||||| || Sbjct 222598 TTCCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 222632 >seq688 Length=8729492 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 4649655 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 4649596 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||||||| |||||| || | ||| || ||||| || ||| Sbjct 4649595 TTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTT 4649536 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | || || | |||||| || || || | Sbjct 4649535 GC--CTTCACATTGTCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCG 4649478 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| || || ||||| ||||||||||| Sbjct 4649477 TCAGAGTCTTCACAAAGATCTGCATTTT 4649450 >seq813 Length=2089867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || |||||||||||||| | ||| | ||||| Sbjct 907415 AGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCC 907356 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || |||| ||| |||||| || | || || ||||| Sbjct 907355 TCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCT 907296 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| | |||| || | |||||||| Sbjct 907295 TGGATCTTGGC--CTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGG 907238 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || || ||||| || |||||||| Sbjct 907237 TCTTTCCGGTTAGGGTCTTGACGAAGATCTGCAT 907204 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||| || || || | ||| | | || |||||||| Sbjct 907862 TGCAGGGTAGACTCCTTCTGGATGTTATAATCAGCTAGGGTCCTTCCATCTTCCAATTGC 907803 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||| ||||| || | |||||| ||||| ||| | Sbjct 907802 TTCCCTGCAAAAATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTG 907743 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| | ||| || | ||||||||||||||||| Sbjct 907742 GCCTTAACATTGTCTATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTTTTTCCGGTG 907683 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || || || |||||||||||| Sbjct 907682 AGGGTCTTCACGAAAATCTGCATT 907659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | ||| ||||| Sbjct 907187 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGCCCGTCC 907128 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || | ||| |||||| || | || || ||||| Sbjct 907127 TCGAGCTGTTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCT 907068 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | |||| || | |||||| | Sbjct 907067 TGGATCTTGGC--CTTGACGTTATCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATAG 907010 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || |||||||| || |||||||| Sbjct 907009 TCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 906976 >seq1421 Length=9127415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 16718 AGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTG 16777 ||||| || |||| || || ||||||||||| || |||||||||||||| | || | Sbjct 1342731 AGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGG 1342790 Query 16778 GCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCT 16837 | ||||| | || ||||| || | || |||| ||||||||| ||| | ||| || Sbjct 1342791 CCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCC 1342850 Query 16838 TTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCGTTTCCACGG 16895 ||||| |||| | |||||| | | | | || | ||| || || |||| || Sbjct 1342851 TTGTCCTGGATTTTCGCCTTCACGTTGTCAATCGTAT--CCGAGCTTTCAACCTCCAAGG 1342908 Query 16896 TGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || ||||| || || || || || |||||||| Sbjct 1342909 TAATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1342948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || || ||||||||||| | ||| | ||||| Sbjct 1342965 AGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCTAGGGTACGGCCGTCC 1343024 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | ||||||| ||| ||||| || | || |||||||| Sbjct 1343025 TCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTCC 1343084 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | |||||| | || |||| ||| || | Sbjct 1343085 TGGATCTTAGCT--TTCACGTTGTCAATTGTGTCGGAGCTTTCAACCTCCAAGGTAATAG 1343142 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || || || || |||||||| Sbjct 1343143 TCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1343176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || || ||||||||||| | ||| | ||||| Sbjct 1343421 AGAACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTACGGCCGTCC 1343480 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || |||| ||||||||| || | ||||| ||||| Sbjct 1343481 TCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTGTCC 1343540 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | |||||| | ||| |||| ||| || | Sbjct 1343541 TGGATCTTAGC--CTTCACGTTATCAATTGTGTCGGAGCTCTCAACCTCCAAGGTAATAG 1343598 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || || |||||||| Sbjct 1343599 TCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1343632 >seq1361 Length=2134540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||| ||||| |||||||| || ||||||||||| || | || | | || Sbjct 1710870 CAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCTCCCATC 1710811 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||| | ||||| || ||| | || | ||||||||||| ||| | ||| || ||||| Sbjct 1710810 CTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTC 1710751 Query 16843 GGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| |||||| | | | | || || ||| |||| |||||| Sbjct 1710750 CTGAATCTTTGC--CTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAGTGTGATG 1710693 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||||||||| |||||||| Sbjct 1710692 GTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCAT 1710658 >seq1830 Length=882674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| ||| || || |||||||||| ||||||||||| || Sbjct 346652 CCTCCCCTCAGTCGCAGCACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGCA 346711 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| ||| |||| || ||||| || || || Sbjct 346712 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 346771 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || |||||| || || | | | | || || | |||| Sbjct 346772 ATGCCTTCCTTGTCCTGAATCTTTGCT--TTAACGTTGTCAATTGTATCTGAGCTCTCCA 346829 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || || | | || |||||||| |||||||| Sbjct 346830 CTTCCAATGTGATGGTCTTCCCTATTAAGGTCTTGACAAAGATCTGCAT 346878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405071125299820