Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq418 89.7 7e-13 >seq418 Length=2515040 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 |||||||| || | ||||| || |||| ||| | || | | |||||||| ||| ||| Sbjct 419177 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 419118 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 419117 TTGGATGTTCCATTCGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 419058 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || || |||| || || |||| |||||||| || Sbjct 419057 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 418998 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || |||||||| ||||| | || || |||||| Sbjct 418997 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 418956 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | || |||||||| ||||| |||||| || ||| | | | Sbjct 418772 AGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTGAGACATCAAGTG 418713 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| ||| || || || || ||||| | || || || || | || | ||| || Sbjct 418712 GTATGTCCTGATGGCAGATTCAATATCATTCTTGTGGATCCCAACAGAAACTCTCATCAA 418653 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || ||||| || | || | | ||||| | ||| || |||| | Sbjct 418652 CATGTGTTGTGGCCTTTCCACAACTTTCCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 418593 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || ||||||||| || || || || Sbjct 418592 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 418545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633604928072800