Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1576 116 3e-21 seq1361 105 6e-18 seq268 104 2e-17 seq1830 100 2e-16 seq1421 98.7 9e-16 seq302 89.7 4e-13 seq813 84.2 2e-11 >seq1576 Length=5940209 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || | ||||| |||| ||||| || Sbjct 2986234 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACAATCACTCTCGAGGTGGAAAGCTCC 2986175 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||||||| ||||||||||| || || || || || Sbjct 2986174 GACACCATTGACAACGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2986115 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| || || || || || | ||||||| || || ||| ||||||||| Sbjct 2986114 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTGGCCGATTACAAC 2986055 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || || || || ||||| ||||| ||||| || || || Sbjct 2986054 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGAGGCTGAGGGGTGG 2986008 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || | ||||| | || ||||| || Sbjct 2986006 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2985947 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| ||||||| ||||||||||| || || || || | Sbjct 2985946 GACACTATTGA--CAATGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATC 2985889 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||| ||||| || || || | || |||| ||||| ||| |||||||| Sbjct 2985888 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGGCCGATTACA 2985829 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || || ||||| ||||| Sbjct 2985828 ACATCCAGAAGGAGTCTACCCTTCATTTGGTGCT 2985795 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| || ||||||| |||| || ||| || Sbjct 2986918 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGTTCC 2986859 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2986858 GACACCATCGA-TAACGTTAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 2986800 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || ||||| || || | || || | ||||| | | ||||||||| Sbjct 2986799 GCAAAGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAA 2986740 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || ||| | ||||| Sbjct 2986739 TATCCAGAAGGAGTCAACCCTCCATCTGGTGCT 2986707 >seq1361 Length=2134540 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || |||||||| | || || ||| || Sbjct 1709974 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 1710033 Query 25059 GACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| || |||||||| ||||| |||||| Sbjct 1710034 GATACCATTGA--CAATGTAAAGGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCTGAC 1710090 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || |||| ||||| || || || | ||||||| || ||| | | || ||| Sbjct 1710091 CAACAGAGGCTTATATTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTAC 1710150 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| ||||| || ||| | || || Sbjct 1710151 AACATCCAAAAAGAGTCCACCCTCCATCTTGTCCT 1710185 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | || || || ||||||| | ||||| ||| || Sbjct 1710202 ATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACTCTTGAAGTTGAGAGCTCG 1710261 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| || || ||||||||||| || || || Sbjct 1710262 GATACCATTGACAATGTGAAGGCTAAGATTCAA-GATAAGGAAGGGATTCCCCCAGATCA 1710320 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | ||||||||||| || || | ||||||| || ||| | | || ||||| Sbjct 1710321 ACAGAGGCTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAA 1710380 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| ||||| || ||| | || || Sbjct 1710381 CATCCAAAAAGAGTCCACCCTCCATCTTGTCCT 1710413 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || |||||| || Sbjct 1710886 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACTCTGGAGGTGGAGAGTTCA 1710945 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || ||||| | || | ||| ||||| |||||||||||||| || || Sbjct 1710946 GATACTATTGATAATGTGAAGGCTAAGATTCAG-GACAAGGAAGGGATTCCACCAGATCA 1711004 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | || |||| ||||| | | || ||||| Sbjct 1711005 GCAGAGGCTGATATTTGCTGGCAAGCAGCTCGAGGATGGGCGCACACTTGCAGACTACAA 1711064 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || ||| | || || Sbjct 1711065 TATCCAGAAGGAGTCCACCCTTCATCTTGTTCT 1711097 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || |||||||| | || || ||| || Sbjct 1710658 ATGCAGATCTTTGTCAAAACACTAACTGGGAAGACCATCACACTGGAGGTTGAGAGTTCA 1710717 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| ||||| ||||| ||||| || ||||| Sbjct 1710718 GATACCATTGACAATGTGAAGGCAAAGATTCAG-GACAAGGAAGGCATTCCTCCAGACCA 1710776 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || ||||| | || |||| | || | | || ||||| Sbjct 1710777 ACAGCGTTTGATCTTTGCAGGTAAACAGCTTGAGGATGGGAGGACACTTGCAGACTACAA 1710836 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| ||||| ||||| Sbjct 1710837 CATTCAGAAGGAGTCTACGCTCCATTTGGTGCT 1710869 >seq268 Length=6919517 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| |||| || ||| | ||||| | ||||| || || Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| || |||||||| || || || || || Sbjct 3332206 GATACAATTGAGAACGTGAAGGCGAAGATTCAG-GATAAAGAAGGAATCCCTCCCGATCA 3332148 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || || ||||| | || |||| || || | | ||||||||| Sbjct 3332147 GCAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAA 3332088 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || |||||||| ||||| ||| | || || ||||| Sbjct 3332087 TATCCAGAAAGAATCAACGCTGCATCTGGTTCTGAGGCT 3332049 >seq1830 Length=882674 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA-GTCGTC 25057 ||||| || ||||| ||||| | || || || |||||||| | || || || || || Sbjct 347105 ATGCAGATCTTTGTGAAGACACTCACAGGAAAGACCATCACACTTGAGGTTGAAGT--TC 347048 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || || || ||||||| | || || || ||||| ||||| || || Sbjct 347047 AGATACCATTGA--CAATGTTAAAGCAAAGATCCAA-GATAAGGAAGGCATTCCCCCAGA 346991 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | || |||| | | || | | || || Sbjct 346990 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTAGGACACTTGCAGACTA 346931 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || || || || || ||||||||||| | || || ||||| Sbjct 346930 CAATATTCAGAAGGAGTCAACACTCCATTTAGTGCTGCGCCTGAGGGGAGG 346880 >seq1421 Length=9127415 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || |||| || | || || || || Sbjct 1342948 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATTACCTTGGAGGTTGAAAGCTCG 1342889 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 1342888 GATACGATTGACAACGTGAAGGCGAAAATCCAGGACAAGGAAGGCATCCCTCCTGACCAA 1342829 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | || |||| || ||| | | ||| ||||| Sbjct 1342828 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTTGCCGACTACAAC 1342769 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || || ||||| ||||| || || |||| Sbjct 1342768 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCAGGCTCAGGGGTGGAA 1342720 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || | || || | || ||||| || Sbjct 1342721 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTGGAGGTGGAAAGCTC 1342662 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| | |||| ||| ||||| || ||||||||||| || | Sbjct 1342661 CGACACAATTGACAACGTGAAGGCTAAAATTCAA-GACAAGGAGGGGATTCCACCGGATC 1342603 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||| ||||| | ||||||| | ||| ||| ||| || | Sbjct 1342602 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGAAGGACTCTGGCCGACTATA 1342543 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || || ||| | || || Sbjct 1342542 ACATCCAGAAGGAGTCTACTCTGCATCTTGTCCT 1342509 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | |||||||| | || || |||| || ||| || Sbjct 1343860 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACTATTACTCTCGAGGTCGAGAGTTCC 1343801 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| || || || || || || || || Sbjct 1343800 GACACCATCGACAACGTCA---AGGCCAAGATTCAA-GATAAGGAGGGCATCCCGCCGGA 1343745 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || ||||| || ||| | || || | ||| || | | |||||| Sbjct 1343744 CCAGCAGAGGCTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGTACCCTCGCCGATTA 1343685 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || ||||| || ||||| || || Sbjct 1343684 CAATATCCAGAAGGAGTCCACCCTTCATTTGGTTCT 1343649 >seq302 Length=4569211 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || |||| || | || ||||| || || Sbjct 222629 ATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACCATAACCCTGGAGGTGGAATCCTCC 222570 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | |||| ||| ||||| || || || ||||||||||| Sbjct 222569 GACACCATCGACAATGTGAAGGCGAAAATTCAA-GACAAGGAGGGAATCCCACCTGACCA 222511 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || || | || || | || || ||| || ||||| Sbjct 222510 GCAGCGGCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGGCGGACCTTGGCGGACTACAA 222451 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || | ||||| Sbjct 222450 CATCCAGAAAGAGTCTACTCTCCACCTGGTGCT 222418 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || || ||||| || ||| | | |||||||| |||||||| || ||| Sbjct 1896264 GACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGAA 1896323 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | ||| ||| |||||||| || || || ||||| || || || | || | Sbjct 1896324 GATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACCTGGTTTTG 1896383 Query 25212 AGGCTAAGAGGAGG 25225 || || || ||||| Sbjct 1896384 AGACTTAGGGGAGG 1896397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433309948909670