Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1576 87.8 1e-12 seq813 86.0 4e-12 seq1361 82.4 5e-11 >seq1576 Length=5940209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| || || ||| | || |||| | | Sbjct 2986006 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2985947 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| || ||||| || | || | | || Sbjct 2985946 GACACTATTGACAATGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2985887 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || || ||| || ||||||||||||| Sbjct 2985886 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGGCCGATTACAAC 2985827 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || |||||||| ||||| |||||| |||| | ||||| Sbjct 2985826 ATCCAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTT 2985789 Score = 86.0 bits (94), Expect = 4e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| |||||||| ||||| || || || |||||| ||| ||||||||||| Sbjct 2986117 CAGCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTGGCCGATTAC 2986058 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||| ||||| |||||| |||| Sbjct 2986057 AACATTCAGAAGGAGTCTACCCTTCATTTGGT 2986026 >seq813 Length=2089867 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| || |||||||||||||| | |||||| || ||| |||| |||||| Sbjct 1896288 CAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGAAGATGGAAGGACTCTGGCTGATTAC 1896347 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || || ||||||||||| || ||||| |||| || Sbjct 1896348 AACATCCAGAAGGAATCAACACTTCACCTGGTTTT 1896382 >seq1361 Length=2134540 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| ||||| ||||| ||| | || || | || Sbjct 1709518 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCA 1709577 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| ||||| || || | ||| | | ||| Sbjct 1709578 GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 1709637 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| || |||||||| || || || || ||| | ||| | || || |||||| Sbjct 1709638 CAGAGACTGATTTTTGCTGGAAAGCAGCTTGATGATGGACGCACTCTTGCAGACTACAAT 1709697 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| ||||| || || Sbjct 1709698 ATCCAGAAGGAGTCTACCCTCCA 1709720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358109881639972