Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1361 114 1e-20 seq1576 111 1e-19 seq268 100 2e-16 seq1421 91.5 1e-13 >seq1361 Length=2134540 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | | || || || ||||| | |||||| || || ||||||||||| || Sbjct 1710887 ATACCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCT 1710828 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| ||||| |||||||| || |||| | |||||||||||| ||| Sbjct 1710827 GCAAGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGA 1710768 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||| || | | |||| ||| || | || Sbjct 1710767 GGAATGCCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCA 1710708 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || || || || || ||||| ||||| ||||||||| Sbjct 1710707 ACCTCCAGTGTGATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCATG 1710657 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||||| || || |||||||| ||||||||||| Sbjct 1710659 ATGCCACCACGAAGGCGGAGGACAAGATGTAGGGTGGACTCTTTTTGGATGTTGTAATCA 1710600 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||| || || ||||| | || || | ||||| || ||| Sbjct 1710599 GCAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGA 1710540 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| || | | |||| ||| || | ||| Sbjct 1710539 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTTTCA 1710480 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || || || || || ||||| ||||| ||||||||| Sbjct 1710479 ACCTCCAGGGTGATGGTCTTCCCAGTAAGTGTTTTGACAAAGATCTGCATG 1710429 >seq1576 Length=5940209 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||| || ||||| | ||||| || || ||||||||||||||| || || || Sbjct 2986017 AGCCTCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTTCGG 2986076 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| || || || |||||| |||| || | ||| || || || || || |||||| Sbjct 2986077 CCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCT 2986136 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| || ||| || | | |||| |||||||| | ||| || || | || Sbjct 2986137 TTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGAGTG 2986196 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || |||||||| || || || ||||| ||||||||| Sbjct 2986197 ATTGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCATG 2986235 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | ||||| || || || |||||||||||| || || || ||| || Sbjct 2985798 ACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCATCCTCG 2985857 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || ||||| |||| || | ||| || || || || || ||||||||||| Sbjct 2985858 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 2985917 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || ||| || | | |||| ||||||| | ||| || || | ||| | || ||| Sbjct 2985918 ATTTTTGCCTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTG 2985977 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || ||||| |||||||| Sbjct 2985978 CCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| || || |||||||||||| | || || ||| || Sbjct 2986253 AACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTC 2986312 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||| || ||| |||| || | ||| ||||| || || || || || ||||| Sbjct 2986313 GAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 2986372 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| |||||||| | || || |||| ||| | || || Sbjct 2986373 GATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCCAGGGTGATTGTCTT 2986432 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| || || |||||||| Sbjct 2986433 ACCCGTGAGGGTTTTCACGAAGATCTGCAT 2986462 >seq268 Length=6919517 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || |||| ||| | ||| | ||| |||||||| || || ||||||||| Sbjct 3332037 ATACCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCG 3332096 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || |||||||| ||| | || | | ||| || || ||| Sbjct 3332097 GCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGA 3332156 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || |||||| || | | |||| || || | | ||| Sbjct 3332157 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCA 3332216 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || ||||||||||| || || || ||||| Sbjct 3332217 ACTTCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCAT 3332266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||||| || || |||||||||||||| ||| | || | || || || ||||| || Sbjct 3332754 GTAGACTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTGTTTCCC 3332812 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| ||||| || ||||| ||||| || || |||||| || Sbjct 3332813 GGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTTCGCCTT 3332872 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||| |||| | ||||| || | || | ||| || ||||| || || Sbjct 3332873 GACGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGTAAGGGT 3332932 Query 114365 TTTTACAAAAATCTGCATG 114383 ||| ||||| || |||||| Sbjct 3332933 TTTCACAAAGATTTGCATG 3332951 >seq1421 Length=9127415 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || || || || || ||||| ||| | ||||| || || Sbjct 1342967 AACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCTAGGGTACGGCCGTCCTC 1343026 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || ||| |||| || | ||| ||||| || || || ||||||||||| Sbjct 1343027 AAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTG 1343086 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | |||| ||||||| | ||| || |||| ||| | || || Sbjct 1343087 GATCTTAGCTTTCACGTTGTCAATTGTGTCGGAGCTTTCAACCTCCAAGGTAATAGTCTT 1343146 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| || || || || || |||||||| Sbjct 1343147 GCCGGTGAGGGTCTTAACGAAGATCTGCAT 1343176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420116898513816