Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq179 150 3e-31 >seq179 Length=2504955 Score = 150 bits (166), Expect = 3e-31 Identities = 386/575 (67%), Gaps = 11/575 (2%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||| ||| ||| | | |||||| ||||||||||| || || |||||| || Sbjct 2366997 GATTGAGTACCCGCAAATCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGC 2366938 Query 42344 CGAGGAGATTGACCTGGCCAAGGA-CACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| |||| || | |||| | | | | | ||||| | || | |||| | Sbjct 2366937 GGAGGAGGTTGATCTCTCTCAGGATCTCCGTCAG-TGGGAAGCCCTAACCTCCGACGAGA 2366879 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 || || | || ||||||| ||||| || |||||||| |||||||| || |||| Sbjct 2366878 AGCACTTTATTAAGCACATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGA 2366819 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGC 42521 | || ||| |||||||||| ||||| ||| |||||||| ||| || ||||| Sbjct 2366818 ATCTCGCCGGACGGTTCATGAAGGAGGTCCAGGTTGCGGAGGCGCG-TGCGTTTTACGGA 2366760 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||| ||||| | ||||||||| ||||| ||| | | || ||| Sbjct 2366759 TTCCAGATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTAC 2366700 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| |||| | | ||| || || ||||| | || || || || ||||||| | Sbjct 2366699 ATCAAGGATTCTGAAGAGAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTG 2366640 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 |||||||||| | ||||| ||| |||||| || | | || | | | |||| ||| Sbjct 2366639 GAGAAGAAGGCTAAGTGGGCTCTCCGCTGGATTGA-TGGCTCG--GAATCATTCGCTGAG 2366583 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCAT 42760 | || | |||||| | || ||||| |||||||||| |||| | || | |||| Sbjct 2366582 CGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTG-TGCCAT 2366524 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||| || || ||| | |||||| || | |||||||||| || | ||| Sbjct 2366523 ATTCTGGCTGAAAAAGCGCGGTCT-GATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCT 2366465 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 | || ||||| |||| | || || || ||| Sbjct 2366464 CGCGAGATGAGGGCTTGCACTGCGATTTCGCATGC 2366430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944298853107680