Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1830 93.3 3e-14 seq1576 89.7 4e-13 seq1361 84.2 2e-11 >seq1830 Length=882674 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/150 (75%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||| ||| || || |||||| | ||||||||| ||||| Sbjct 346652 CCTCCCCTCAGTCGCAGCACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGC- 346710 Query 33961 AATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || || | |||||||| ||||| ||||| ||||||||||| || Sbjct 346711 AAGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGG 346770 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| | | | ||||||| Sbjct 346771 AATGCCTTCCTTGTCC-TGAATCTTTGCTT 346799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||| | ||| || || |||||||||||| ||||| |||| | Sbjct 346880 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTG-C 346938 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || |||| || | || || | |||||||||||||| ||||| | |||||| || Sbjct 346939 AAGTGTC-CTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTC 346992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCT--CTCCTTCTGAATGTTGTAATCTG 33958 ||||| ||||| |||||||||| ||| || || | || ||| ||||||||||| |||| Sbjct 346427 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTCATGACTTCTTTTGAATGTTGTAGTCTG 346486 Query 33959 CCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| | | | || | | |||||||| ||||| ||||| ||||||||||| Sbjct 346487 -CAAGTGTCCTCCCATCCGCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATC 346541 >seq1576 Length=5940209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| |||||||| |||||| || ||||||||||||||||||||| ||| Sbjct 2986008 CCACCCCTCAGCCTCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 2986067 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || || | ||||| || || || || || | ||||||||| || Sbjct 2986068 AGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGG 2986127 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA- 34079 | | ||||||||| |||||| ||| | | | | || | || || || Sbjct 2986128 ATTCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTC-GGAGCTTTCCAC 2986186 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || ||||| || ||||| || || || |||||||| ||||| Sbjct 2986187 CTCGAGAGTGATTGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 >seq1361 Length=2134540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || |||||||| ||| ||||||||| || ||||| ||||| || ||| || Sbjct 1711103 AGTCGAAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGC-AAGTGTGCG 1711045 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | |||||||| ||||||||||| | ||||||||| Sbjct 1711044 CCCATCCTCGAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGATC 1711000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397045859621236