Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1720 84.2 5e-11 >seq1720 Length=1106218 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30971 GCCCACGAATGTTCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATA 31030 ||||| | || ||| | || || ||||||||||||| ||||||| | ||| |||| Sbjct 1083334 GCCCAAGCATTCTCCCTACGGATCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTGGATA 1083275 Query 31031 CCGAACACTTTTCGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGA 31090 ||| | ||| | ||||| || || || || || || || | ||||| | || |||| Sbjct 1083274 TTGAAAATTTTGCTGATCTCCTCTGGTGTCTTCCCCTTGATCATATCAGCAACAGTTTGA 1083215 Query 31091 CATAGAACATCAAGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAA 31139 || || |||||||| ||| || ||||| | |||||| || || ||| Sbjct 1083214 CAGGTAAGATCAAGCAAACTATTGATGTTGAGGAAATTAGCAGCTAGAA 1083166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102831701438300