Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq179 125 9e-24 seq418 102 1e-16 seq2704 84.2 3e-11 >seq179 Length=2504955 Score = 125 bits (138), Expect = 9e-24 Identities = 183/257 (71%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| || || ||||| | |||||||||||| ||| || ||||| ||||| ||||| Sbjct 2366452 CCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCGCTTT 2366511 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| |||||| || |||||||| || ||||||||||| ||||| ||||| || || Sbjct 2366512 TTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGCAAAG 2366571 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || || | ||||||||| || || ||| |||| ||| | ||||||| Sbjct 2366572 GCCAACAAACGCTCAGCGAATGATTCCGA---GCCATCAATCCAGCGGAGAGCCCACTTA 2366628 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTTCTTTTCT 126301 ||||| ||||| | ||| || || || | ||||| | || | ||||||| ||| Sbjct 2366629 GCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCTTCA 2366688 Query 126302 GATGGATCTTTGATGTA 126318 || ||| |||||||| Sbjct 2366689 GA---ATCCTTGATGTA 2366702 >seq418 Length=2515040 Score = 102 bits (112), Expect = 1e-16 Identities = 213/316 (67%), Gaps = 20/316 (6%) Strand=Plus/Plus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||||||||| || |||| || |||| |||||| ||| || || ||||||||||| || Sbjct 2302573 GAATTACCGGGAGGCCTACGGGATCTTCGCGTGCAACGGCATCCTGTTCAACCACGAATC 2302632 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATG---------GTATCAA 8758 || | || || | |||||||||| |||||||||| | | ||||| Sbjct 2302633 CCCGAGACGCGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGGCGGATCAA 2302692 Query 8759 ACAAATCGTCGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGG 8817 | |||| || | | || || || | |||||||| | | || |||| Sbjct 2302693 A---ATCG----GGCTCCAAAGCAAGCTCTTCC---TGGGGAACTTACAGGCGTCAAGGG 2302742 Query 8818 ACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGG 8877 |||||||| ||| ||||||||| ||||| |||||| | | ||||| || || || Sbjct 2302743 ACTGGGGATTCGCAGGGGACTATGTGGAAGCAATGTGGATGATGCTTCAGCAGGAGAAGC 2302802 Query 8878 CGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGT 8937 ||||||| || || || || |||| |||| | ||| |||| ||||||| | ||| || Sbjct 2302803 CGGACGATTACGTGGTGGCCACGGAGGAGTCTCACACCGTGCAGGAGTTCTTGGAGGTGG 2302862 Query 8938 GCTTTAGGGAAGTTGG 8953 ||| || | ||||| Sbjct 2302863 CGTTTGGGTATGTTGG 2302878 >seq2704 Length=3870086 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| ||||| || | | | ||| ||| || |||||| || || || || || Sbjct 2119113 ATCAAACCGACCAGGCCTCAACAAGGCTGAGTCGAGAATATCAGCACGATTAGTGGCGGC 2119172 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 || || | || || || | || || || ||||| || |||| |||||| || | Sbjct 2119173 AATAACTATAATTCCGGTGTTTCCTTCGAAACCGTCCATTTCCGTCAGGAGTTGGTTAAG 2119232 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACCGACGG 10967 ||||| || | || |||||| | || | | || | | | |||| || || | Sbjct 2119233 AGTTTGCTCTCTCTCGTCATTCCCTCCGCCAATC-CCGGTTCCTCTTTGCCGCCCAACAG 2119291 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATA 11026 ||||||||||||||| || || || || || ||||| ||| ||| ||| | Sbjct 2119292 CGTCAATTTCATCGACAAATACAATGCAGGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGG 2119350 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACAT 11086 || ||||| | ||||| || || |||||||| || ||||| | | | ||| || Sbjct 2119351 TCACGGACACGAGATGCACCAACGCCAACAAACATCTCAACAAACTCCGAACCCGAA-AT 2119409 Query 11087 TG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 11145 || || ||| || || || ||||||||| |||||| ||| || ||||||||||| || Sbjct 2119410 TGAGAAGAAAGGAACACCGGCTTCACCCGCTATGGCTTTGGCTAGTAGGGTCTTCCCGGT 2119469 Query 11146 CCCAGG 11151 || || Sbjct 2119470 ACCCGG 2119475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597328078067440