Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1830 122 9e-23 seq688 118 1e-21 seq302 107 2e-18 seq1421 98.7 1e-15 seq1576 96.9 4e-15 seq268 86.0 7e-12 seq813 84.2 2e-11 >seq1830 Length=882674 Score = 122 bits (134), Expect = 9e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||| ||||||||| | ||| |||||||| ||| ||||| || || Sbjct 346652 CCTCCCCTCAGTCGCAGCACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGCA 346711 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | | || || |||||||| ||||| || || ||||||||||| || | || Sbjct 346712 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 346771 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| | |||| || | ||| | | | || || |||| || Sbjct 346772 ATGCCTTCCTTGTCC-TGAATCTTTGCTTTAACGTTGTCAATTGTATCTGAGCTC---TC 346827 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||||| || || ||| ||||| |||||||| ||||| Sbjct 346828 CACTTCCAATGTGATGGTCTTCCCTATTAAGGTCTTGACAAAGATCTGCAT 346878 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||| ||| ||||| | ||| |||||| ||||||||||| || || Sbjct 346880 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGCA 346939 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || |||||||| || || || || || | ||||||||| | || Sbjct 346940 AGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 346999 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA-TTCCAC 42160 | || ||||| | | || | |||| || | | | | || | || || | ||| || Sbjct 347000 ATGCCTTCCTTAT-CTTGGATCTTTGCTTTAACATTGTCAATG-GTATCTGAACTTCAAC 347057 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 347058 CTCAAGTGTGATGGTCTTTCCTGTGAGTGTCTTCACAAAGATCTGCAT 347105 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCT--CTCCTTTTGAATATTGTAATCAG 42039 ||||| || | ||||| ||||||||| | ||| | || ||||||||| ||||| || | Sbjct 346427 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTCATGACTTCTTTTGAATGTTGTAGTCTG 346486 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 | || |||| | | || | |||||||| ||||| || || ||||||||||| || | | Sbjct 346487 CAAGTGTCCTCCCATCCGCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGG 346546 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC-GCTCGATTC 42157 | | || ||| ||| | |||| || | | | | | | || || | | || Sbjct 346547 GAATGC-------CTCCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTTCTC 346599 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||||| || || |||| ||||| || ||||| ||||| Sbjct 346600 CACTTCCAATGTGATGGTCTTCCCTGTTAAGGTCTTGACGAAGATCTGCAT 346650 >seq688 Length=8729492 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 4649644 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 4649585 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || ||||||||| ||| ||| || | | Sbjct 4649584 GATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATT 4649525 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| |||||| || |||| ||||| || || ||||| || ||||| || Sbjct 4649524 GTCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCGTCAGAGTCTTCAC 4649465 Query 42197 AAAGATTTGCATTTT 42211 |||||| |||||||| Sbjct 4649464 AAAGATCTGCATTTT 4649450 >seq302 Length=4569211 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || |||| |||||| |||| || |||||||| || ||||| Sbjct 222438 CTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTCCAGCTGCTTTCCGGCGAA 222497 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | ||| | | |||||||| | ||| |||| | || | Sbjct 222498 GATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGT-CTTGAATTTTCGCCTTCACAT 222556 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| |||||||| || | || ||||| || ||||| || || || | Sbjct 222557 TGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCTTCCCCGTCAGGGTTTTCA 222616 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 222617 CGAAGATCTGCATCTT 222632 >seq1421 Length=9127415 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || || || | |||||||| | ||| |||||| || ||||||||||| || Sbjct 1343634 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 1343693 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || || ||||| || ||||| || || | ||||||||| | || Sbjct 1343694 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 1343753 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCG---CTCGATT 42156 | || |||||| | | ||| | || | |||| ||| | | | |||||| ||| | Sbjct 1343754 ATGCCCTCCTTAT-CTTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAACTC---T 1343808 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| || || || || || ||||| || || |||||||| ||||| Sbjct 1343809 CGACCTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1343860 >seq1576 Length=5940209 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | ||||| ||| | || |||||| || ||||||||||| || Sbjct 2986692 CCACCCCTGAGACGGAGCACCAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCG 2986751 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || || | |||||||| | || Sbjct 2986752 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGA 2986811 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCC 42158 | | ||||||||| ||| || || | | | | |||||| ||| || Sbjct 2986812 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCGATGGTGTCGGAACTC---TCG 2986868 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 2986869 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 2986918 >seq268 Length=6919517 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || || || | |||| || ||||| || || ||||| Sbjct 3332759 CTCCTTCTGAATGTTGTAATCCGCTAGGGTTCTGCCGTCGTCGAGCTGTTTCCCGGCGAA 3332818 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | | ||||| ||| ||| | || | |||| || Sbjct 3332819 GATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCC-TGAATCTTCGCCTTGA-CG 3332876 Query 42136 TCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | || || |||| || || |||| ||||| || || || || || || Sbjct 3332877 TTGTCGATGGTATCGGAGCTC---TCGACCTCGAGAGTGATCGTCTTACCGGTAAGGGTT 3332933 Query 42192 TTTACAAAGATTTGCAT 42208 || |||||||||||||| Sbjct 3332934 TTCACAAAGATTTGCAT 3332950 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| || || |||||||| || ||||| || | || || Sbjct 907641 CACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCAAGAGTGCGGCCATCCTC 907582 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || ||||| || || | |||||| || | || | | ||||||||| Sbjct 907581 CAGCTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTG 907522 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| || |||| | | | ||||| ||| ||| || || | |||||||| Sbjct 907521 GATCTTGGCCTTGACGTTATCAATGGTGTCTGAGCT---TTCAACCTCCAGTGTGATGGT 907465 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || ||||| || ||||||||||| Sbjct 907464 CTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 907432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543189591233120