Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq688 120 3e-22 seq1361 113 4e-20 seq813 109 5e-19 seq1421 104 2e-17 seq302 96.9 3e-15 seq3321 93.3 4e-14 seq1576 93.3 4e-14 seq268 93.3 4e-14 >seq688 Length=8729492 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 4649646 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 4649587 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || ||||| ||||| ||| ||| || | | Sbjct 4649586 AAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTCACA 4649527 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| || ||||||| || | ||| || || |||||||| || Sbjct 4649526 TTG-TCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCGTCAGAGTCTT 4649468 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4649467 CACAAAGATCTGCAT 4649453 >seq1361 Length=2134540 Score = 113 bits (124), Expect = 4e-20 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| |||| || ||||| | | |||||||| |||||||||||||| Sbjct 1710884 CCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 1710825 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||||| || |||||||| | | |||| | |||||||||||| ||||| Sbjct 1710824 AGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 1710765 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | |||| || |||| || | ||| || | ||| | Sbjct 1710764 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTCACATTG-TCAATGGTATCTGAACTCTCAA 1710707 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||| || ||||| ||||| ||||||||| Sbjct 1710706 CCTCCAGTGTGATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCATG 1710657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | ||| | | | ||||| ||||| ||||||||||| Sbjct 1710201 GCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTGC 1710142 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || || || || || | | | || || | ||||||||| ||||| Sbjct 1710141 AAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAATATAAGCCTCTGTTGGTCAGGAGG 1710082 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || |||||||| || ||| | || | ||| |||| || | ||| || | ||| Sbjct 1710081 AATTCCTTCTTTATC-TTGAATCTTAGCCTTTACATTG-TCAATGGTATCTGAGCTCTCA 1710024 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| |||||||| ||||| |||||||| Sbjct 1710023 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCAT 1709974 >seq813 Length=2089867 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 907431 GCCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 907372 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||||||| ||||| |||| |||| || | ||| |||||||| || Sbjct 907371 GAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 907312 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||||| |||||| Sbjct 907311 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCAC 907252 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || || || || || |||||||| Sbjct 907251 CTCGAGGGTGATGGTCTTTCCGGTTAGGGTCTTGACGAAGATCTGCAT 907204 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | |||||| ||||||||| ||||| |||| Sbjct 907169 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGCCCGTCCTCGAGCTGTTTTCCGGCG 907110 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || ||||| ||||| ||| || || | Sbjct 907109 AAGATCAGTCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 907050 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| || | || || || || || ||||| Sbjct 907049 TTATCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATAGTCTTTCCGGTTAGGGTTTTG 906990 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 906989 ACGAAGATCTGCAT 906976 >seq1421 Length=9127415 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | ||| || | ||| ||||| | | | |||||||| || || ||||| ||| Sbjct 1343633 GCCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGC 1343692 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| |||||||||||| || |||| |||| || | ||| |||||||| || Sbjct 1343693 GAGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGG 1343752 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || || ||| | || | || | ||| || | |||||||| ||| Sbjct 1343753 GATGCCCTCCTTATC-TTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAACTCTCG 1343810 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || ||||| || || ||||| ||||| |||||||| Sbjct 1343811 ACCTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1343860 >seq302 Length=4569211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| |||||| || || || |||| Sbjct 222436 GACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTCCAGCTGCTTTCCGGCG 222495 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| ||||| || || || || || ||||| ||| |||| | || Sbjct 222496 AAGATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTC-TTGAATTTTCGCCTTCAC 222554 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| || |||||||| | || | || || || ||||| |||| Sbjct 222555 ATTG-TCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCTTCCCCGTCAGGGTTT 222613 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 222614 TCACGAAGATCTGCAT 222629 >seq3321 Length=7168875 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | || ||| ||||||||| | || |||| Sbjct 34876 GAATCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCGAGCTACTTTCCGGCG 34817 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || || || ||||| || || || || || ||||| |||||| || | | Sbjct 34816 AAGATGAGGCGTTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTCACA 34757 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||| | || | ||| || || ||||| || || Sbjct 34756 TTG-TCAATGGTGTCCGATGACTCGACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTCTT 34698 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 34697 CACAAAGATCTGCAT 34683 >seq1576 Length=5940209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || ||||| | | | |||||||| || |||||||| ||| | Sbjct 2985780 CCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCC 2985839 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| || | ||| || || || || Sbjct 2985840 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGG 2985899 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||||||| || | |||| || | ||||||| ||||| Sbjct 2985900 ATTCCTTCTTTGTCCTGGATTTTTGCCTTGACATTG-TCAATAGTGTCGGAGCTTTCCAC 2985958 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || ||||| |||||||| Sbjct 2985959 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||| ||||||||||| ||| || || || || ||| Sbjct 2986026 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTTCGGCCATCTTCG 2986085 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || || | |||| || | ||| || || || || || ||||||||||| | Sbjct 2986086 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 2986145 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 |||||| || | | || | |||||||| |||||||||| || | || || Sbjct 2986146 ATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGAGTGATTGTCTTG 2986205 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || || || ||||| ||||||||| Sbjct 2986206 CCGGTAAGGGTCTTGACAAAGATCTGCATG 2986235 >seq268 Length=6919517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGT-CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| ||||||||||| | |||| | || | ||| ||||| ||||| |||| Sbjct 3332757 GACTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTGTTTCCCGGC 3332815 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| |||||||| ||||| || || || ||||| || || ||| | || | || | Sbjct 3332816 GAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATC-CTGAATCTTCGCCTTGA 3332874 Query 138540 --TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||| || | ||| |||| ||| ||||||| || | ||| ||||| || || ||| Sbjct 3332875 CGTTG-TCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGTAAGGGTT 3332933 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| || |||||| Sbjct 3332934 TTCACAAAGATTTGCATG 3332951 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGT-CGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 |||| ||||| ||||||||||| | |||| | || | ||| ||||| || || ||| Sbjct 3332527 TTGATTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTGCTTCCCG 3332585 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TT 138535 | |||| |||||||| ||||| || || || ||||| || || ||| | || | || Sbjct 3332586 GCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATC-CTGAATCTTAGCCTT 3332644 Query 138536 TTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAG 138595 |||| || | || |||| ||| ||||||| || | ||| |||||||||| | Sbjct 3332645 GACATTG-TCGATCGTATCGGAACTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGG 3332703 Query 138596 TTTTTACAAAAATCTGCAT 138614 |||| || || |||||||| Sbjct 3332704 TTTTCACGAAGATCTGCAT 3332722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241197188960