Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1361 98.7 7e-16 seq268 96.9 2e-15 seq1421 89.7 4e-13 >seq1361 Length=2134540 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| | || ||||| || ||||| || || || |||||||| || Sbjct 1710884 CCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 1710825 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | || || | ||||| || || | ||||||||||||||||| ||| Sbjct 1710824 AGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 1710765 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| || ||| | || || ||||| | | || || Sbjct 1710764 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTCACATTGTCAATGGTATCTGAACTCTCAAC 1710706 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 1710705 CTCCAGTGTGATGGTCTTCCCAGTTAGTGTTTTGACAAAGATCTGCAT 1710658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || | ||| ||||| || |||||||| |||||||| || Sbjct 1710202 TGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTG 1710143 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| | || || ||||| |||| | | ||||||||| | Sbjct 1710142 CAAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAATATAAGCCTCTGTTGGTCAGGAG 1710083 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || ||| || |||||| | || || ||||| | || | Sbjct 1710082 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCAA 1710023 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || ||||| || || || |||||||| ||||| || |||||| Sbjct 1710022 CCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTCACAAAGATCTGCATA 1709973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | || | ||| | ||||||||| || || || || || ||||| || Sbjct 1711113 GCCACCACGAAGTCGAAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGC 1711054 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | | || || | || |||||||| |||||| | ||| || || ||| Sbjct 1711053 AAGTGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGATCTGGTGG 1710994 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| ||| || || ||| | || |||||||| | | || || Sbjct 1710993 AATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATAGTATCTGAACTCTCCAC 1710934 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || ||||| || || || ||||| || |||||| Sbjct 1710933 CTCCAGAGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCATA 1710885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || |||||||| ||||||||||| || | | | ||||| | || Sbjct 1710633 ATGTAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGTGTACGACCATCTTCAAGCTG 1710574 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || ||||| | |||| | ||||| || ||||| ||||||||||| || || Sbjct 1710573 CTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTT 1710514 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || ||||| | |||| || || | ||| ||||| || || | Sbjct 1710513 TGC-CTTCACATTGTCAATGGTATCTGAACTTTCAACCTCCAGGGTGATGGTCTTCCCAG 1710455 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || ||||| Sbjct 1710454 TAAGTGTTTTGACAAAGATCTGCAT 1710430 >seq268 Length=6919517 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| || | ||| | ||| || || || ||||| || || ||||||||| Sbjct 3332040 CCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCGGCT 3332099 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | ||||| || ||| | ||||| | ||| || ||| || Sbjct 3332100 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGAGGG 3332159 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || || || | || || ||||| |||| || Sbjct 3332160 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCAACT 3332219 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || ||||| || ||||||||||| || || ||||||||| Sbjct 3332220 TCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCATA 3332267 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCTGAGAATTCTCGCGTCTTCTAATTG 15032 || || ||||| || || || |||||||||| |||| || |||| |||| || | || Sbjct 3332748 TGCAGAGTAGACTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTG 3332806 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | || | |||||| ||||| |||||||||||||| || ||| || Sbjct 3332807 TTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTT 3332866 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || | || || |||||| | || || || | || || || ||||| || Sbjct 3332867 CGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGT 3332926 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| ||||| |||||||| |||||| Sbjct 3332927 AAGGGTTTTCACAAAGATTTGCATGCTTGAAA 3332958 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCTGAGAATTCTCGCGTCTTCTAATTG 15032 || || || || || || || |||||||||| |||| || |||| |||| || | || Sbjct 3332520 TGGAGTGTTGATTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTG 3332578 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | |||||| ||||| |||||||||||||| || ||| || Sbjct 3332579 CTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTT 3332638 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || |||||| | | || || || | ||||| || ||||| || Sbjct 3332639 AGCCTTGACATTGTCGATCGTATCGGAACTCTCGACCTCGAGAGTAATCGTCTTACCAGT 3332698 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 3332699 CAAGGTTTTCACGAAGATCTGCAT 3332722 >seq1421 Length=9127415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || | ||||| | ||| ||||||||||| || || || || || ||||||||| Sbjct 1343632 TGCCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGG 1343691 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | ||| || || ||| | |||| | ||| ||||| | Sbjct 1343692 CGAGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCG 1343751 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || ||||| || ||| ||| || || | || || || ||| | | || | Sbjct 1343752 GGATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGA 1343811 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||| || ||||| || || ||||| ||||| || ||||| Sbjct 1343812 CCTCGAGAGTAATAGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1343860 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| ||| ||| | | | || || Sbjct 1342740 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGGCCATCCTCA 1342799 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | || | | ||||||||| || || ||||||||||| Sbjct 1342800 AGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 1342859 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || || | || || ||||| |||| || || ||||||||||| || Sbjct 1342860 ATTTTCGCCTTCACGTTGTCAATCGTATCCGAGCTTTCAACCTCCAAGGTAATGGTCTTG 1342919 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || || |||||| Sbjct 1342920 CCGGTGAGGGTCTTAACGAAGATCTGCATA 1342949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357377112166130