Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1421 134 1e-26 seq1576 118 1e-21 seq268 116 3e-21 seq1361 102 7e-17 seq813 96.9 3e-15 seq688 89.7 5e-13 >seq1421 Length=9127415 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||| |||||||| |||||| || ||| | || || | ||| Sbjct 1343657 ATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGACCGTCCTCGAGTTG 1343716 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || ||| | |||| | |||||||||||||| ||||| || ||||||||||| || Sbjct 1343717 CTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTATCTTGAATCTT 1343776 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | |||||||||| |||||| |||||||||| || || |||| Sbjct 1343777 GGCCTTGA-CGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTAATAGTCTTACCGG 1343835 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 |||| ||||| ||||| || |||||| Sbjct 1343836 TTAGGGTTTTCACAAAGATCTGCATC 1343861 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || |||||||| || || ||||| ||||| ||||| ||| Sbjct 1342494 CCCCCACGGAGACGGAGGACAAGATGCAGAGTAGACTCCTTCTGGATGTTATAGTCGGCC 1342553 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| |||||||| || | ||||| | ||||| ||||| ||| Sbjct 1342554 AGAGTCCTTCCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGA 1342613 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || ||||||||||| || | || | || | |||||||| || || Sbjct 1342614 ATCCCCTCCTTGTCTTGAATTTTAGCCTTCA-CGTTGTCAATTGTGTCGGAGCTTTCCAC 1342672 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| || ||||| || || || || || || || ||||| Sbjct 1342673 CTCCAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1342720 >seq1576 Length=5940209 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||| ||||| |||||||| |||||| || ||| || || Sbjct 2986709 CACCAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCGTCCTC 2986768 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | |||| | ||||||||| || ||||| ||||| || || || Sbjct 2986769 GAGCTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 2986828 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | |||||||||| |||||| |||||||| | || | Sbjct 2986829 GATCTTAGCCTTAA-CGTTATCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCT 2986887 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||| ||||| ||||| || |||||| Sbjct 2986888 TGCCGGTTAGGGTTTTCACAAAGATCTGCATC 2986919 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||| ||||| || |||||| | ||| || || | || Sbjct 2986488 TGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTACGGCCGTCCTCAAGCTGC 2986547 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||| | ||||||||| || ||||| || || || || || || || Sbjct 2986548 TTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 2986607 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||||| |||||| |||||||| | || |||||||| Sbjct 2986608 GCCTTGA-CGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTGCCGGT 2986666 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || || || |||||| Sbjct 2986667 TAGGGTTTTCACGAAGATCTGCATC 2986691 >seq268 Length=6919517 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| ||||||| || ||||||||||||||||| || |||||||| |||||| Sbjct 3332037 ATACCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCG 3332096 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | ||||| || ||| | ||||| | ||||| || || Sbjct 3332097 GCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGA 3332156 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||||||||| ||||| || || | || | || | || || || || Sbjct 3332157 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCA-CGTTCTCAATTGTATCCGAGCTTTC 3332215 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||||| || || |||||||| || || |||||||| Sbjct 3332216 AACTTCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCAT 3332266 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || |||||||| || | | || || || || ||||||||||| || ||||| ||||| Sbjct 3332265 ATACCTCCGCGAAGACGGAGAACGAGGTGGAGTGTTGATTCCTTCTGTATATTGTAATCA 3332324 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| || || | ||||| || ||| | |||||||| ||||| ||||| Sbjct 3332325 GCT-AGGGTTCGTCCGTCCTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGATCCGG 3332383 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 |||||| || || || |||||||| || |||| || | || ||||| ||| Sbjct 3332384 CGGAATACCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCGATCGTATCGGAGCTCTC 3332443 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||||| ||| || || || | ||||| || || || |||||| Sbjct 3332444 GACCTCGAGAGTAATCGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCATC 3332495 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT-C 45169 || |||||||| || | | ||| || || || ||||||||||| || || || |||| | Sbjct 3332493 ATCCCTCCGCGCAGACGGAGCACGAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCC 3332552 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | ||||| | || || || ||| | || | || |||||||| || Sbjct 3332553 GCT-AGGGTTCTGCCGTCGTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCAGG 3332611 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 |||||| ||||| ||||| ||||| || |||| || | || |||||| ||| Sbjct 3332612 CGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGGAACTCTC 3332671 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||||| ||| || || || | ||||| || || || |||||| Sbjct 3332672 GACCTCGAGAGTAATCGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCATC 3332723 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || ||||| || || |||||||| ||||| || |||||| Sbjct 3331812 CCACCGCGAAGACGGAGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCT 3331871 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | ||||| || ||| | ||||| || |||||||| || ||| Sbjct 3331872 AGGGTGCGCCCATCCTCGAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCTGGAGGA 3331931 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| ||||| |||| || | || ||||| ||| || Sbjct 3331932 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGACATTATCAATTGTATCGGAGCTCTCCACC 3331991 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || || |||| || || || || || ||||| Sbjct 3331992 TCCAGAGTGATTGTCTTCCCAGTTAATGTCTTCACGAATATCTGCAT 3332038 >seq1361 Length=2134540 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAG--AATCGT 45189 || || || || || || ||||||||||||||||| | ||| || | | ||| | Sbjct 1709498 ACAAGGTGGAGGGTAGACTCCTTTTGGATATTATAGT--CTGCAAGTGTACGGCCATCTT 1709441 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || |||||||| | |||| ||| || || || || ||||| ||||| ||||||| Sbjct 1709440 CAAGCTGCTTTCCTGCAAAAATCAGTCGCTGTTGATCTGGAGGAATTCCTTCCTTATCTT 1709381 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | |||||| || | || | ||| |||||| ||| || || ||||||| || | Sbjct 1709380 GGATTTTTGCCTTAACATTATCAATGGTATCGGAACTCTCAACCTCAAGAGTAATAGTCT 1709321 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || ||||| |||||||| || |||||| Sbjct 1709320 TTCCAGTAAGAGTCTTTACAAAGATCTGCATC 1709289 >seq813 Length=2089867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| | || || || || ||||| ||||| || || ||| Sbjct 907205 ATACCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 907146 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | |||||||| ||| | |||| || ||||||||||| Sbjct 907145 GCGAGGGTACGCCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGG 907086 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || |||| || | || | |||||| || ||| Sbjct 907085 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTATCGATGGTGTCAGAGCTCTC 907027 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || || |||||||| ||||| || || || |||||| Sbjct 907026 CACCTCGAGGGTGATAGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCATC 906975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || || ||||| ||||| || || ||| || ||| || || Sbjct 907413 CACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 907354 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||||| ||| | |||| | ||||||||||| ||||| ||||| || ||||| Sbjct 907353 GAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 907294 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | ||||||||| ||| || ||||| || | || | Sbjct 907293 GATCTTGGCCTTGA-CGTTATCAATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCT 907235 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || || || || || ||||| Sbjct 907234 TTCCGGTTAGGGTCTTGACGAAGATCTGCAT 907204 >seq688 Length=8729492 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 4649679 CCACCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4649620 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 4649619 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGG 4649560 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || ||| || | || | |||||| || || || || Sbjct 4649559 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCCGACGATTCAACC 4649500 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||| || || || ||||| || ||||| || ||||| Sbjct 4649499 TCGAGGGTGATCGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 4649453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983888163280