Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq179 129 7e-25 seq418 89.7 6e-13 seq1043 87.8 2e-12 >seq179 Length=2504955 Score = 129 bits (142), Expect = 7e-25 Identities = 337/506 (67%), Gaps = 21/506 (4%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || || ||||| | |||||||||||| ||| || ||||| ||||| ||||| Sbjct 2366452 CCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCGCTTT 2366511 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||| |||||| || |||||||| || ||||||||||||||||| ||||| || || Sbjct 2366512 TTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGCAAAG 2366571 Query 127658 GCAAATAGACGCTCGGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCGCCCACT 127715 || || | |||||| || || || || | | ||||| ||| | ||||||| Sbjct 2366572 GCCAACAAACGCTCAGCGAATGATTCCGAGCC-----ATCAATCCAGCGGAGAGCCCACT 2366626 Query 127716 GTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTTCTTTT 127772 ||||| ||||| | ||| || || || | ||||| | || | ||||||| || Sbjct 2366627 TAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCTT 2366686 Query 127773 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT 127832 | || ||| |||||||| | || | || || | || ||||| || Sbjct 2366687 CAGA---ATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTCAGAGTGGA--TATT 2366741 Query 127833 CATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGC 127890 | ||||| ||| | |||| || | ||||| || | ||| ||||| | | Sbjct 2366742 CTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAACCTGGACCTC--CTTC 2366799 Query 127891 A-AAATTGT-TATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGG 127948 | || || || |||||| ||||| || || ||||| | |||||||| || || Sbjct 2366800 ATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAAAAAGGCAAGT 2366859 Query 127949 ATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATCCTTT 128008 || | ||| || || | || || | | | |||| | ||| | |||||||| Sbjct 2366860 ATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCACTGACGGAGATCCTGA 2366919 Query 128009 GAGAGATCTACCTCCTCCGCAGTCCA 128034 |||||||| ||||||||||| ||||| Sbjct 2366920 GAGAGATCAACCTCCTCCGCCGTCCA 2366945 >seq418 Length=2515040 Score = 89.7 bits (98), Expect = 6e-13 Identities = 210/315 (67%), Gaps = 18/315 (6%) Strand=Plus/Plus Query 10563 GAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTC 10622 |||||| || || |||| || |||| | |||| ||| || || ||||||||||| || Sbjct 2302573 GAATTACCGGGAGGCCTACGGGATCTTCGCGTGCAACGGCATCCTGTTCAACCACGAATC 2302632 Query 10623 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATG---------GTATCAA 10673 || | || || | |||||||||| |||||||||| | | ||||| Sbjct 2302633 CCCGAGACGCGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGGCGGATCAA 2302692 Query 10674 ACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGA 10733 | |||| ||| | || || || | |||||||| | | || ||||| Sbjct 2302693 A---ATCG-GGCTCC--AAAGCAAGCTCTTCC---TGGGGAACTTACAGGCGTCAAGGGA 2302743 Query 10734 CTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGC 10793 ||||||| ||| ||||||||| ||||| |||||| | | || || || || || | Sbjct 2302744 CTGGGGATTCGCAGGGGACTATGTGGAAGCAATGTGGATGATGCTTCAGCAGGAGAAGCC 2302803 Query 10794 GGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTG 10853 |||||| || || || || |||| |||| | ||| |||| ||||||| | ||| || Sbjct 2302804 GGACGATTACGTGGTGGCCACGGAGGAGTCTCACACCGTGCAGGAGTTCTTGGAGGTGGC 2302863 Query 10854 CTTTAGGGAAGTTGG 10868 ||| || | ||||| Sbjct 2302864 GTTTGGGTATGTTGG 2302878 >seq1043 Length=14449934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| |||||||| ||||||||||| ||||| || || || || | ||||||||| | | Sbjct 9036849 GAACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACC 9036790 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 || | || || | | ||| | || || || |||||||| ||||| || || || Sbjct 9036789 TCCAAGC--CCTGCTCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATAAACACAATG 9036732 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || | |||| || ||| ||||| | ||| | |||||| || || ||||| Sbjct 9036731 CA-GGGGGCTTTTGACTTGGCTTTCTCAAACAAATCCCTCACTCTGGAAGCCCCCACACC 9036673 Query 12968 CACAAACATCTCCACAAA 12985 |||||||| ||||||||| Sbjct 9036672 CACAAACAGCTCCACAAA 9036655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613480987904880