Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq179 120 5e-22 >seq179 Length=2504955 Score = 120 bits (132), Expect = 5e-22 Identities = 396/609 (65%), Gaps = 9/609 (1%) Strand=Plus/Plus Query 159746 AGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGC 159805 ||||| || || ||||||||||| ||||| | |||| | || | || ||||||| | Sbjct 2366257 AGCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATCCCCACC 2366316 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 | | ||| ||||| || ||| || ||| ||||||| || || ||||| | |||| Sbjct 2366317 AAAGCACAGGGAAGCGCGTCACACACGAATTCCCTCTCAATATCAACAGCTTCAGCCACA 2366376 Query 159866 ATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC 159925 | | || || || | | | ||| | | | | | || || | | | ||| Sbjct 2366377 AGTGACTTCACGCGCTCCTCGCTCAACTTCCTCCTCA-GCAGCCCGTAGA--GCAAGCAT 2366433 Query 159926 GCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCC 159985 || || |||||||||| ||||| || || ||||| ||||| || || | | | ||| Sbjct 2366434 GCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCC 2366493 Query 159986 GGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATC 160045 ||||| | || ||| ||| ||||| || ||||| |||| ||| || |||||| Sbjct 2366494 GGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATC 2366553 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC 160105 ||||| || ||||| |||| | | |||| | || || | | | ||| || Sbjct 2366554 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA---TTCCGAGCCATCAATC 2366610 Query 160106 CACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAAC 160165 || | ||||| | ||||||||| | | || |||| || | |||| ||| Sbjct 2366611 CAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAAC 2366670 Query 160166 AATCTGTCCTGCTCCTTCA-CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTC 160224 || ||||||| || ||||| ||||||||| ||| | | ||| |||||| || Sbjct 2366671 AACCTGTCCTTCT-CTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTC 2366729 Query 160225 TGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTG 160284 | ||| | ||| |||||||| ||||| || ||| || ||||||| | ||| Sbjct 2366730 AGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAACCTG 2366789 Query 160285 CACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAA 160344 ||||||| |||||| | | ||||| | ||| | ||||||| ||| ||||| Sbjct 2366790 GACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAA 2366849 Query 160345 GAAAGCCAA 160353 |||| ||| Sbjct 2366850 -AAAGGCAA 2366857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795121226994080