Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1421 102 6e-17 seq1830 84.2 2e-11 seq1576 84.2 2e-11 seq268 84.2 2e-11 >seq1421 Length=9127415 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | ||||| ||| || || || || ||||| |||||| Sbjct 1342494 CCCCCACGGAGACGGAGGACAAGATGCAGAGTAGACTCCTTCTGGATGTTATAGTCGGCC 1342553 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||| ||||| ||| |||| || || | ||||||||||| || Sbjct 1342554 AGAGTCCTTCCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCCGGTGGA 1342613 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| ||||| || | ||| | | | |||||| | ||||||||| Sbjct 1342614 ATCCCCTCCTTGTCTTGAATTTTAGCCTTCA-CGTTGTCAATTGTGTCGGAGCTTTCCAC 1342672 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || ||||| | || || |||||||||||||| Sbjct 1342673 CTCCAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1342720 >seq1830 Length=882674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || | || || || ||||||| | ||||||||||| | ||| | |||||| | Sbjct 346722 CATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCT 346781 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 |||| | | | |||| || | ||| | | | ||| |||| ||| ||||| ||||| || Sbjct 346782 TGTC-CTGAATCTTTGCTTTAACGTTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTG 346840 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || |||| || || || ||||||||||| Sbjct 346841 ATGGTCTTCCCTATTAAGGTCTTGACAAAGATCTGCAT 346878 >seq1576 Length=5940209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | |||||| || |||||||| | || || || || || || |||| Sbjct 2985776 CATC-CCACCCCTCAAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAAT 2985834 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||| ||| |||| || | || || || |||| || | | ||||||||| | Sbjct 2985835 CGGCCAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTG 2985894 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 ||| | ||||||||||| |||||| || || ||| || ||||| | ||| Sbjct 2985895 GGGGGATTCCTTCTTTGTCCTGGATTTTTGCCTTGACATTGTCAATA--GTGTCGGAGCT 2985952 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || | || ||||| || || || | || || || ||||||||||| Sbjct 2985953 TTCCACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 >seq268 Length=6919517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || |||||||| ||||| || | ||| | || || | ||||||||| | || Sbjct 3332303 TTCCTTCTGTATATTGTAATCAGCTAGGGTTCGTCCGTCCTCGAGCTGTTTCCCGGCGAA 3332362 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATC 39645 ||| || ||||||||||||| || | || || ||||| | || || | || Sbjct 3332363 AATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTGAATCTTAGCCTTGACATT 3332422 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| | || || | ||| || || || | |||||| || ||||| || || ||||| Sbjct 3332423 GTCG--ATCGTATCGGAGCTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGGTTTTC 3332480 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 3332481 ACGAAGATCTGCAT 3332494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347355129667994