Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2704 113 6e-20 seq179 105 8e-18 seq418 82.4 9e-11 >seq2704 Length=3870086 Score = 113 bits (124), Expect = 6e-20 Identities = 233/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || || |||||| | ||||| || ||||| || || | ||| || |||||| || | | Sbjct 2119144 TCGAGAATATCAGCACGATTAGTGGCGGCAATAACTATAATTCCGGTGTTTCCTT--CGA 2119201 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GC 16034 |||| ||||| || |||| || ||||||| |||||| || | || |||||| || || Sbjct 2119202 AACCGTCCATTTCCGTCAGGAGTTGGTTAAGAGTTTGCTCTCTCTCGTCATTCCCTCCGC 2119261 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | || | | | |||| || || || ||||| ||||| | || || ||||| Sbjct 2119262 CAATC-CCGGTTCCTCTTTGCCGCCCAACAGCGTCAATTTCATCGACAAATACAATGCAG 2119320 Query 16095 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||||| || ||| ||| || || || ||||| || || || ||||| Sbjct 2119321 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGGTCACGGACACGAGATGCACCAACGCCAAC 2119379 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | ||| |||| || ||| || ||| | |||||||| Sbjct 2119380 AAACATCTCAACAAACTCCGAACCCGAA-ATTGAGAAGAAAGGAACACCGGCTTCACCCG 2119438 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | |||||| ||| || || ||||| || ||||| || Sbjct 2119439 CTATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCCGG 2119475 >seq179 Length=2504955 Score = 105 bits (116), Expect = 8e-18 Identities = 300/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || |||||||| | || || ||||| ||||||||||| ||||||||||| || Sbjct 2366594 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGT 2366535 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || || || || | ||||| || ||||| ||||| ||||| || | | |||||| || Sbjct 2366534 TTTTGTGCCATATTCTGGCTGAAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAAT 2366475 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAAT 102348 ||| | ||||| || || ||||| | ||| || || || | | | || | | Sbjct 2366474 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTCGCATGCTTG--CTCTACGGGC 2366417 Query 102349 TATTGCGTATTAA-ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAG 102407 | || | | || | ||| ||| | | || |||| ||||| ||||| Sbjct 2366416 TGCTGAGGAGGAAGTTGAGCGA-GGAGCGCGTGAAGTCACTTGTGGCTGAAGCTGTTGAT 2366358 Query 102408 ATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAA 102467 ||||||| || |||| | | || || ||||| || ||| | | || |||||| || Sbjct 2366357 ATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTGTGCTTTGGTGGGGATGAATGGGGAT 2366298 Query 102468 AAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC-C 102526 |||| | |||| || || | ||| ||||||||||| | | | || ||| ||| Sbjct 2366297 CTGATGAGCCAATACATAGAATTTGTGGCTGATAGATTGCT-AGGTGCATTGGGATGCAG 2366239 Query 102527 TCCAATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAA 102586 | || | || ||||||| ||||| | |||||| || ||| | | || || Sbjct 2366238 TAAGATGTACAATGTTCAGAATCCGTTTGATTGGATGGAGCTGATCAGCTTACAGGGAAA 2366179 Query 102587 GACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||| || ||||| || ||||||||||| || ||| Sbjct 2366178 GACCAATTTCTTTGAGAAGAGGGTTGGAGAATAT 2366145 >seq418 Length=2515040 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 112589 || |||| ||||| |||| | |||||||| || ||||| || ||||| ||||| Sbjct 420304 GTTACAACTAACCTGAACAAAATTATTGATGTCAACTTTTATCCTGTTGAAACTGCAAAG 420363 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 || |||||| || | ||| | || ||||| | |||||||||||||| || || |||| Sbjct 420364 AACTCTAATTTGCGTCACAGGCCCATTGGGATTGGTGTCCAAGGTCTTGCTGACACATTC 420423 Query 112650 ATTCTTTGTCGCCA-CGCATTTGATTC 112675 ||| || ||| || || |||||||| Sbjct 420424 ATT-TTACTCGGCATGGCTTTTGATTC 420449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620715878780960