Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2704 123 3e-23 seq179 118 1e-21 seq1361 82.4 9e-11 >seq2704 Length=3870086 Score = 123 bits (136), Expect = 3e-23 Identities = 310/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 || |||||||| |||| || || |||||||| |||| ||| || || | |||||| Sbjct 2119144 TCGAGAATATCAGCACGATTAGTGGCGGCAATAACTATAATTCCGGTGTTTCCTTCGAAA 2119203 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 ||||||||||| || || || ||||| | || || || | ||| || || | | Sbjct 2119204 CCGTCCATTTCCGTCAGGAGTTGGTTAAGAGTTTGCTCTCTCTCGTCATTC-----CCT- 2119257 Query 11656 CCACC--TGCCGAACGCTTCTTACCG----ACAGCGTCAATCTCATCGATGAATACGATA 11709 || || | ||| || || ||| ||||||||||| ||||||| ||||| || Sbjct 2119258 CCGCCAATCCCGGTTCCTCTTTGCCGCCCAACAGCGTCAATTTCATCGACAAATACAATG 2119317 Query 11710 CACGGTTGGTTGGCACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 || || ||| | | || || | | |||||| ||||| ||||| || ||||| || Sbjct 2119318 CAGGGAGCGTTTTC-CTTGGCTTTCTTGAAAAGGTCACGGACACGAGATGCACCAACGCC 2119376 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCAC 11827 || ||||||||||| || | | | ||| | ||| | ||| |||||| | |||| Sbjct 2119377 AACAAACATCTCAACAAACTCCGAACCCGAA-ATTGAGAAGAAAGGAACACCGGCTTCAC 2119435 Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887 | || |||||| || || || ||||| || ||||| || | ||| ||||||| | | Sbjct 2119436 CCGCTATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCCGGAGGACCGACGAGAAGAACTC 2119495 Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | ||||| || ||| | || | | ||| |||||||| | ||| ||||| | Sbjct 2119496 CTTTAGGGATGCGTGCTCCAACTGCAGTAAACCTCTCGGGCTTCTTCAAGAACTCCACCA 2119555 Query 11948 TCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 |||| || || | ||| || || | |||| ||||||| Sbjct 2119556 CCTCCATAAAATCTTGCTTCGCTTCATCCACACCCGCAACATC 2119598 >seq179 Length=2504955 Score = 118 bits (130), Expect = 1e-21 Identities = 176/244 (72%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| |||| || ||||| | |||||| |||| | | || ||||| || || | Sbjct 2366449 AAGCCCT-CATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCG 2366507 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 || || ||||| || |||||||||||||| || || |||||||| ||||| ||||| || Sbjct 2366508 CTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGC 2366567 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 || || || | ||||||||| || | | |||| | || | ||| ||||||||| Sbjct 2366568 AAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCC--ATCAATCCAGCGGAGAGCCCAC 2366625 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTG--CTTCTTT 119744 || ||||| ||| | ||||| ||||| | || || | ||| || || ||||| | Sbjct 2366626 TTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCT 2366685 Query 119745 TCAG 119748 |||| Sbjct 2366686 TCAG 2366689 >seq1361 Length=2134540 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 136713 CTTAT-AGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||||| |||||||||||||||||||| ||||| ||||||| |||||||| |||||||| | Sbjct 998341 CTTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGAC 998282 Query 136772 CCGT-TGGG 136779 | || |||| Sbjct 998281 CTGTATGGG 998273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588950836000400