Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq179 127 2e-24 seq2704 113 5e-20 seq418 104 3e-17 seq3197 89.7 6e-13 seq656 89.7 6e-13 seq1262 87.8 2e-12 seq207 86.0 7e-12 seq276 84.2 3e-11 >seq179 Length=2504955 Score = 127 bits (140), Expect = 2e-24 Identities = 185/259 (71%), Gaps = 13/259 (5%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||||| || || | ||||| |||||| | | || ||||| ||||| ||||| Sbjct 2366452 CCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAGACCGCGCTTT 2366511 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||| ||| | || || || || ||||||||||||||| ||||| ||||| ||||| Sbjct 2366512 TTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCCCCTCAACACAAGCAAAG 2366571 Query 117412 GCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATTGCCCATT 117469 || || | ||||| ||||| || |||| | |||| ||| | ||||| | Sbjct 2366572 GCCAACAAACGCTCAGCGAATGATTCCGAGCC-----ATCAATCCAGCGGAGAGCCCACT 2366626 Query 117470 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC---TGCTTCTTTT 117526 | ||||||||||| | ||| || ||||| | || || | || ||| | ||||| || Sbjct 2366627 TAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTGTCCTTCTCTT 2366686 Query 117527 CAGATCCATCCTTAATGTA 117545 |||| |||||| ||||| Sbjct 2366687 CAGA---ATCCTTGATGTA 2366702 >seq2704 Length=3870086 Score = 113 bits (124), Expect = 5e-20 Identities = 231/336 (69%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 || || |||||| | ||||| || ||||| || || | ||| || |||||| || | | Sbjct 2119144 TCGAGAATATCAGCACGATTAGTGGCGGCAATAACTATAATTCCGGTGTTTCCTT--CGA 2119201 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-GC 9341 |||| ||||| || |||| |||||||||| |||||| || | || |||||| || || Sbjct 2119202 AACCGTCCATTTCCGTCAGGAGTTGGTTAAGAGTTTGCTCTCTCTCGTCATTCCCTCCGC 2119261 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | || | | | |||| || || || ||||| ||||| | || ||||| || Sbjct 2119262 CAATC-CCGGTTCCTCTTTGCCGCCCAACAGCGTCAATTTCATCGACAAATACAATGCAG 2119320 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || || || || || | || || || |||||| Sbjct 2119321 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGGTCACGGACACGAGATGCACCAACGCCAACA 2119380 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | ||| |||| || ||| || ||| | ||||||||| Sbjct 2119381 AACATCTCAACAAACTCCGAACCCGAA-ATTGAGAAGAAAGGAACACCGGCTTCACCCGC 2119439 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||||| ||| || || ||||| || ||||| || Sbjct 2119440 TATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCCGG 2119475 >seq418 Length=2515040 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || ||||| || |||||||| || || ||||| | || ||| ||||| ||||| Sbjct 418784 CTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTG 418725 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || ||||||| | | |||| ||||| || | | |||||| || | | Sbjct 418724 AGACATCAAGTGGTATGTCCTGATGGCAGATTCAATATCATTCTTGTGGATCCCAACAGA 418665 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||||| ||| || |||||| | | || | || || || |||| Sbjct 418664 AACTCTCATCAACATGTGTTGTGGCCTTTCCACAACTTTCCCCT-GAACC-TTCAAGAGG 418607 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | | ||||||||||||| |||||| ||| || ||||| |||| || Sbjct 418606 TAAGACCTTTCAAGGGTTTTGAAACCAAAATAATCATAATCAAAGTCTCG 418557 >seq3197 Length=603451 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||||| || || || |||| |||||| ||| | || ||||| | ||||||||| | Sbjct 140462 TGGAAAAGCAATCGAAGCCAGATTGCAGACATCAGTTTCATCTGGACTTGTGTACTCAAT 140403 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 ||| || ||||||||||| ||| ||||| || || | ||||| |||||| || ||| | Sbjct 140402 AATCTCAGTACACAAGTTAGAAGATTTAATAGTACCAAGATTCTGTTGGTTGCTTTTTCT 140343 Query 106576 GTTGCACGCATCCT 106589 ||||| | ||||| Sbjct 140342 ATTGCAAGAATCCT 140329 >seq656 Length=2434700 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || || || |||| |||||| ||||| || ||||| | ||||||||| | ||| || Sbjct 848306 GCAATCGAAGCCAGATTGCAGACAGCAGTTTCATCTGGACTTGTGTACTCAATAATCTCA 848365 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 ||||||||||| ||| ||||| || || | ||||| |||||| || ||| | ||||| Sbjct 848366 GTACACAAGTTAGAAGATTTAATAGTACCAAGATTCTGTTGGTTGCTTTTTCTATTGCAA 848425 Query 106583 GCATCCT 106589 | ||||| Sbjct 848426 GAATCCT 848432 >seq1262 Length=2036080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136169 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 136228 ||| |||||||||| | |||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 1330795 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACAACCTGGGTTCAACTCCCGGT 1330736 Query 136229 AGGAGCTT 136236 |||| ||| Sbjct 1330735 AGGACCTT 1330728 >seq207 Length=1184981 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||||| ||||||||||||||||||||| | ||| Sbjct 1013111 GGCAAAGTCACAGTGTAGACCCTCATCTCTGGAAATAAGTTCATTTGAGAATGCCAAGCC 1013170 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 |||||| || | || ||| || | |||| |||| || || || Sbjct 1013171 TGGCATTAGGCACCTCTTTTTAAGCCAAAAAATGGCACAAAA 1013212 >seq276 Length=5621588 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 |||||| || || || |||| ||||| ||| | || ||||| | ||||||||| | Sbjct 1863157 TGGAAGAGCAATCGAAGCCAGATTGCCGACATCAGTTTCATCTGGACTTGTGTACTCAAT 1863098 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 ||| || ||||||||||| || ||||| || || | ||||| |||||| || ||| | Sbjct 1863097 AATCTCAGTACACAAGTTAAAAGATTTAATAGTACCAAGATTCTGTTGGTTGCTTTTTCT 1863038 Query 106576 GTTGCACGCATCCT 106589 ||||| | ||||| Sbjct 1863037 ATTGCAAGAATCCT 1863024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589955593070320