Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq3418 600 1e-166 seq2653 260 2e-64 seq2647 239 5e-58 seq3417 187 3e-42 seq1564 170 2e-37 seq2036 107 2e-18 >seq3418 Length=161897 Score = 600 bits (664), Expect = 1e-166 Identities = 725/984 (74%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 1559 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1500 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 1499 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCC 1441 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || |||| | || |||||||| Sbjct 1440 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAA 1381 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || || ||| ||||||| |||||||| Sbjct 1380 TATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAAT 1321 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| || | | ||||| |||||||| || || |||||||| | | | | Sbjct 1320 TTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 1261 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 1260 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1201 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| || ||||| || || | || || || Sbjct 1200 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGC 1141 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 ||| ||| | | |||||| | |||||||| ||| ||||||||||||||||||||||| Sbjct 1140 AGTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1081 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || ||||| |||||| | |||||||| || |||||||||||||||||||| || Sbjct 1080 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 1021 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || |||||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 1020 ATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 961 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| ||| | || Sbjct 960 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 901 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 900 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 841 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| |||||||||||||| | | ||||||||| |||| Sbjct 840 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGC 781 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | |||||| | || ||||||||||| Sbjct 780 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAA 721 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | ||||| || || || |||||||| || || ||| | | || | ||| ||| Sbjct 720 CCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 661 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 660 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 601 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| |||||||| |||||| |||| Sbjct 600 TCATAACTTCCCTCTAGACCTAGC 577 >seq2653 Length=4899193 Score = 260 bits (288), Expect = 2e-64 Identities = 292/390 (75%), Gaps = 9/390 (2%) Strand=Plus/Plus Query 168864 CTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTAT 168923 ||||||| |||||| || ||||| || || | || || ||||| ||| | | | Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCT 3225491 Query 168924 ACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCA 168983 ||||| | |||||||| ||| ||||||||||||||||||||||| ||||| || |||| Sbjct 3225492 ACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 3225551 Query 168984 ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTA--------TGCATCCCTTCCA 169035 | |||||| | |||||||| || ||||||||||||||| |||| || || || Sbjct 3225552 A-TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCA 3225610 Query 169036 TATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACT 169095 |||| ||| ||||| ||| | ||||| || || |||||| || ||||||||||| | Sbjct 3225611 TATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 3225670 Query 169096 TGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAA 169155 ||||| ||| | | |||| || || || || | |||| | ||| | ||||||| Sbjct 3225671 GGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAG 3225730 Query 169156 GTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATT 169215 ||||||||||| |||||||| |||||||| || || || ||||| || || || |||| Sbjct 3225731 ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATT 3225790 Query 169216 AATCTTCCAGTATGCAAGTTTCAACAACTC 169245 ||||| || ||||| |||||||||||||| Sbjct 3225791 GATCTTTCAATATGCTAGTTTCAACAACTC 3225820 >seq2647 Length=4788780 Score = 239 bits (264), Expect = 5e-58 Identities = 293/399 (73%), Gaps = 1/399 (0%) Strand=Plus/Minus Query 168914 TTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCT 168973 || ||| | |||||| | || ||||| ||| ||||||||||||||||||||||| ||| Sbjct 734478 TTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 734419 Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 | || ||||| |||||| | |||||||| | |||||||||||||||||||| || ||| Sbjct 734418 AGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCATTC 734359 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 |||||| ||| ||||| || | ||||| || || |||||| | ||||||||||| Sbjct 734358 CATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTCC 734299 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | |||| ||| | | ||||| || || | | | |||||| ||| | |||||| Sbjct 734298 TTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGTTAC 734239 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 || ||||||||||| |||| | | |||||||| || | | ||||| || || || || Sbjct 734238 AAATTCGGTCAAGAGGAAG-ACCTTATAATATCGTAGTTGTTCATGGTTATTTTGGCCGA 734180 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTG 169273 || |||||| | ||||| |||||||||||||| | | ||||||||| |||| | Sbjct 734179 TTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCT 734120 Query 169274 TTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATC 169312 | | || | | || | ||||| || || | |||||| Sbjct 734119 TGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGTATC 734081 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 169310 ATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTT 169369 ||| |||| |||||||||||| | ||||| || || || |||||||| || | ||| | Sbjct 733762 ATCAGTACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGT 733703 Query 169370 AACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAA 169429 | || | ||| ||| |||| ||| | ||||| || ||||||||||||||| Sbjct 733702 CAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAA 733643 Query 169430 GTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 || |||||||| |||| |||| |||||||| |||||| |||| Sbjct 733642 GTTATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGC 733599 >seq3417 Length=265768 Score = 187 bits (206), Expect = 3e-42 Identities = 231/316 (73%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 169158 TCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAA 169217 |||||||||| ||| |||| |||||||| || || || ||| || || || |||| | Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 169218 TCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCC 169277 ||||||| ||||| |||||||||||||| | | ||||||||| |||| | | | Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 169278 CAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACG 169337 | || || || | ||||| || || | |||||| | || |||||||||||| | || | Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 169338 GATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTG 169397 | | || || |||||||| || || ||| | || | ||| || |||| || Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTG 155971 Query 169398 ACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACT 169457 | | ||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||| Sbjct 155970 ATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 155911 Query 169458 TCCCACTAGACTTAGC 169473 |||| |||||| |||| Sbjct 155910 TCCCTCTAGACCTAGC 155895 >seq1564 Length=1404973 Score = 170 bits (188), Expect = 2e-37 Identities = 264/374 (71%), Gaps = 5/374 (1%) Strand=Plus/Minus Query 168531 TTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATT 168589 |||| ||||| ||||| || |||||||| |||||| || ||| | | ||| || ||| Sbjct 141181 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATT 141123 Query 168590 GTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGT 168649 | || || |||||||| || || || ||||| || || || | |||||||| | || Sbjct 141122 ATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 141063 Query 168650 GCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATC 168709 ||||| | || || ||||| || ||||| ||||| || |||| |||| || || Sbjct 141062 TCTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATA 141003 Query 168710 GGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGT 168769 || ||||||| ||||||||||||||||| || | | ||||| |||||||| || || Sbjct 141002 AGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGC 140943 Query 168770 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGA 168829 |||||||| | | | | | |||||| || | || | || ||||||||| | Sbjct 140942 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 140883 Query 168830 CAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 168889 |||||||| | | | | || |||||| | |||||||| |||||| || ||||| Sbjct 140882 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCT 140823 Query 168890 CCAGTATCTGCAGC 168903 || || |||||| Sbjct 140822 CCTGT---TGCAGC 140812 >seq2036 Length=7432206 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 168951 ATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGC 169010 ||||||||||| | || | | ||| ||||| |||||| | |||||||| || ||| Sbjct 2690585 ATGGTATGCCTTCAAAAAAATTTAAAACTTTCAATTTCATGATTGTATTCCAGGCCAAGC 2690526 Query 169011 ACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTC 169070 |||||||||||| ||| || || |||||| ||| ||||| ||| | |||| ||| ||| Sbjct 2690525 ACAACATTCTTACGCACCCATTTCATATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTC 2690466 Query 169071 TATTCTCCGCAATGCATGGTTC 169092 ||||| || ||||||||||| Sbjct 2690465 TATTCAGTGCTATGCATGGTTC 2690444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564417484232640