Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq3418 547 1e-150 seq2653 257 2e-63 seq2647 217 2e-51 seq1564 165 1e-35 seq3417 163 4e-35 seq2036 104 3e-17 >seq3418 Length=161897 Score = 547 bits (606), Expect = 1e-150 Identities = 701/966 (73%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | Sbjct 1538 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 1479 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || |||| ||||| ||||| ||||| || ||||| || || || Sbjct 1478 GCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 1419 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| | | || || ||||| || |||||||||||| || | Sbjct 1418 CGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTATTATT 1359 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || | ||| || || || |||||||| ||||| || |||||||| ||| | ||||| Sbjct 1358 CCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGAT 1299 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| |||| || | | |||||| | ||||| | Sbjct 1298 GAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1239 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| | |||||||| Sbjct 1238 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 1179 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| ||||| || ||||| | ||||| ||||| ||| | | || ||| || Sbjct 1178 GCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTACCCAATC 1119 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 |||||||| ||| ||||||| |||||| || ||||||||||| || ||||| | |||| Sbjct 1118 GGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATG 1059 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| ||||||||||||||||||||||| ||||||||||| || |||||||| || ||| Sbjct 1058 ATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCATATGTTAGGCGTAGCT 999 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 998 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 939 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| ||| | ||||||| ||||| |||||||| Sbjct 938 ATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAA 879 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || ||||||||||| || ||||| ||||| || | ||||||||||| || Sbjct 878 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 819 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | ||||||||| | || || | ||||| | ||||| Sbjct 818 AGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATC 759 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| || |||||||| |||||||| ||||||||||| |||||| Sbjct 758 TGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAACGGTTTCAATTTCAAC 699 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || || || ||| ||||||||| || | ||||| | Sbjct 698 CAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 639 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 638 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 579 Query 216275 GCTGCT 216280 |||||| Sbjct 578 GCTGCT 573 >seq2653 Length=4899193 Score = 257 bits (284), Expect = 2e-63 Identities = 291/390 (75%), Gaps = 9/390 (2%) Strand=Plus/Plus Query 215667 CTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGT 215726 ||||||| |||||| ||||| || ||||| | ||||| ||||| ||| | | | Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCT 3225491 Query 215727 ATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCA 215786 | ||| |||||||||| ||| ||||||| |||||| || ||||||||||| || |||| Sbjct 3225492 ACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 3225551 Query 215787 ACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGA--------TGCACCCATTCCA 215838 | | |||| |||| ||||||||| ||||||||||||| | |||||||||| || Sbjct 3225552 ATT-CATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCA 3225610 Query 215839 CATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACT 215898 |||||||| || |||||||| ||||| || || | ||| ||| ||||| ||||| | Sbjct 3225611 TATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 3225670 Query 215899 TGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAA 215958 || || ||| | | |||| || || || || | |||| | ||| | ||||||| Sbjct 3225671 GGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAG 3225730 Query 215959 GTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCT 216018 ||||| |||||||| ||||| || || ||||||||||| || ||||| ||||| || | Sbjct 3225731 ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATT 3225790 Query 216019 CATCTTCCAATACGCATCTTTCAACAACTC 216048 ||||| ||||| || |||||||||||| Sbjct 3225791 GATCTTTCAATATGCTAGTTTCAACAACTC 3225820 >seq2647 Length=4788780 Score = 217 bits (240), Expect = 2e-51 Identities = 248/332 (75%), Gaps = 1/332 (0%) Strand=Plus/Minus Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776 || ||| | || ||| |||| ||||| ||| ||||||| |||||| || ||||||||| Sbjct 734478 TTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 734419 Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 | || ||||| | |||| |||| ||||||| ||||||||||||||| |||||||||||| Sbjct 734418 AGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCATTC 734359 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 || ||| |||| || ||| |||| ||||| || || | ||| || ||||| ||||| Sbjct 734358 CATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTCC 734299 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || | ||| | | ||||| || || | | | |||||| ||| | |||||| Sbjct 734298 TTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGTTAC 734239 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 || ||||| |||||||| | | | || || ||||||| || || ||||| ||||| || Sbjct 734238 AAATTCGGTCAAGAGGAAG-ACCTTATAATATCGTAGTTGTTCATGGTTATTTTGGCCGA 734180 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTC 216048 | |||||| |||| || |||||||||||| Sbjct 734179 TTGATCTTCTAATATGCTAGTTTCAACAACTC 734148 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||||| ||||||||||| |||||||| ||||| | || || Sbjct 733756 ACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGTCAAGGC 733697 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||||||||| || | ||||| || |||||||||||||| ||| Sbjct 733696 CGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAGTTATG 733637 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTG 216278 || || |||| |||| |||||||| ||||| | |||| Sbjct 733636 CATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGCTG 733597 >seq1564 Length=1404973 Score = 165 bits (182), Expect = 1e-35 Identities = 262/376 (70%), Gaps = 0/376 (0%) Strand=Plus/Minus Query 215331 ACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCA 215390 || |||| ||||||||||| | ||||| ||| | | | || || || || | Sbjct 141184 ACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTA 141125 Query 215391 TCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTG 215450 | |||| ||||| ||||| ||||| || ||||| || || || | || || ||| ||| Sbjct 141124 TTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTG 141065 Query 215451 GTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAA 215510 | ||| || | || || ||||| || |||||||||||| || | || | ||| || | Sbjct 141064 GATCTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTA 141005 Query 215511 TCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATG 215570 | | |||||||| ||||| || |||||||| ||| | ||||| |||||| | ||||| | Sbjct 141004 TAAGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACG 140945 Query 215571 GTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAA 215630 | || |||| |||| || | | |||||| | ||||| | || ||| || Sbjct 140944 GCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTC 140885 Query 215631 GACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCG 215690 | ||||||||||| || | | | |||||| | |||||||| |||||| ||||| | Sbjct 140884 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAG 140825 Query 215691 CACCTGTATCTGCTGC 215706 | ||||| | ||||| Sbjct 140824 CTCCTGTTGCAGCTGC 140809 >seq3417 Length=265768 Score = 163 bits (180), Expect = 4e-35 Identities = 228/320 (71%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 215961 TCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCA 216020 |||| |||||||| |||| || || ||||||||||| || ||| ||||| || | | Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 216021 TCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCC 216080 |||||||||| || |||||||||||| | | ||||||||| | || || | | Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 216081 CTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACG 216140 |||| | |||||||| ||||| | ||| || |||||||| |||||||| || | Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 216141 GTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAG 216200 ||| || |||||||| || || || || || || ||| |||||||| | Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTG 155971 Query 216201 ACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 216260 | | ||||| | || |||||||||||||| ||||| || ||||| ||||| |||| Sbjct 155970 ATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 155911 Query 216261 TCCCATTAGACTTGGCTGCT 216280 |||| ||||| | |||||| Sbjct 155910 TCCCTCTAGACCTAGCTGCT 155891 >seq2036 Length=7432206 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 215779 AACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCA 215838 ||| ||||| | |||| |||| |||||||| ||||||||||||| | ||||||||| || Sbjct 2690560 AACTTTCAATTTCATGATTGTATTCCAGGCCAAGCACAACATTCTTACGCACCCATTTCA 2690501 Query 215839 CATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895 ||| ||||||| |||||||| |||| ||| | | ||| ||| ||||| ||||| Sbjct 2690500 TATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTCTATTCAGTGCTATGCATGGTTC 2690444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745049766388640