Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3418 558 4e-154 seq2653 228 9e-55 seq2647 221 1e-52 seq3417 178 2e-39 seq1564 178 2e-39 seq2036 87.8 2e-12 >seq3418 Length=161897 Score = 558 bits (618), Expect = 4e-154 Identities = 705/969 (73%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1550 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1491 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 1490 ACTTTATTGACCGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGAT 1431 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || |||||| Sbjct 1430 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAATATTATCTCT 1371 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || ||||||||||| Sbjct 1370 GGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAATTTGGGAAGCG 1311 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || ||||| ||||||||| || || || | | |||||| Sbjct 1310 GCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTC 1251 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | |||| | |||||| Sbjct 1250 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 1191 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| ||||| || ||||| || |||| || ||| || ||||| Sbjct 1190 CGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTG 1131 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||||||| ||| || || || ||||||||||| ||||| ||||| Sbjct 1130 ATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 1071 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || || |||||| | |||||||| || |||||||||||||||||||||||||| |||||| Sbjct 1070 TTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCATATG 1011 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 1010 TTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 951 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || ||| | || |||| |||| Sbjct 950 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTC 891 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 890 GGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 831 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | ||||||||| | ||| | | ||| Sbjct 830 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCT 771 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | |||||||| ||| | | ||||| |||| |||||||| ||||| || || Sbjct 770 GTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAACGGT 711 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | || ||| || ||| ||||| || Sbjct 710 TTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGAT 651 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | ||||| | || ||||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 650 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 591 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 590 CCTCTAGAC 582 >seq2653 Length=4899193 Score = 228 bits (252), Expect = 9e-55 Identities = 283/387 (73%), Gaps = 9/387 (2%) Strand=Plus/Plus Query 170063 CTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGT 170122 ||||||| ||| ||||| || ||||| || |||| || ||| || ||||| | | Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCT 3225491 Query 170123 ATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTA 170182 | || ||||||||||| ||| || || || ||||||||||| ||||| ||||| || | Sbjct 3225492 ACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 3225551 Query 170183 ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCT--------TATGCACCCATTCCA 170234 | |||||| | |||||||| || ||||||||||||| |||||||||||| || Sbjct 3225552 A-TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCA 3225610 Query 170235 TATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACT 170294 |||| ||| || |||||| | ||||| || | || ||| || ||||| ||||| | Sbjct 3225611 TATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 3225670 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 ||||| ||| | | |||| || || ||||| || || | ||| | || |||| Sbjct 3225671 GGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAG 3225730 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 |||||| ||||| |||||||| || || || || || || ||||| || ||||| || | Sbjct 3225731 ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATT 3225790 Query 170415 TATCTTCCAATATGCTAGCTTTAACAA 170441 ||||| ||||||||||| || ||||| Sbjct 3225791 GATCTTTCAATATGCTAGTTTCAACAA 3225817 >seq2647 Length=4788780 Score = 221 bits (244), Expect = 1e-52 Identities = 296/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 170108 CTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTA 170167 |||| |||||| | || || |||| |||||| ||| || || || ||||||||||| | Sbjct 734482 CTGTTTTCTTA-TCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 734424 Query 170168 TCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACC 170227 |||| |||| || || |||||| | |||||||| | |||||||||||||||||||||| Sbjct 734423 TCTCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACC 734364 Query 170228 CATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACG 170287 ||||||||||| ||| || ||| || | ||||| || | || ||| | ||||| | Sbjct 734363 CATTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATG 734304 Query 170288 GTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATG 170347 |||| | |||| ||| | | ||||| || || | | | || || || ||| | | Sbjct 734303 GTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAG 734244 Query 170348 GATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTG 170407 | ||||||||||| ||||| |||| | | || || || || | | ||||| || |||| Sbjct 734243 GTTACAAATTCGGTCAAGAGGAAG-ACCTTATAATATCGTAGTTGTTCATGGTTATTTTG 734185 Query 170408 GTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTG 170467 | || | |||||| |||||||||| || ||||| |||| | ||||||||| | | Sbjct 734184 GCCGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAG 734125 Query 170468 CTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCAC 170516 || | | | ||||| | | |||||||| ||| | | ||||| |||| Sbjct 734124 CTGCTTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGTATCAGCAC 734076 >seq3417 Length=265768 Score = 178 bits (196), Expect = 2e-39 Identities = 226/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 |||| ||||| ||| |||| || || || || || || ||| || ||||| || | | Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||||||||||||||| || ||||| |||| | ||||||||| | ||| | | | Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 ||||||| | |||||||| ||| | | ||||| |||| |||||||| ||||| |||| Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | | || |||||||| || | || ||| | || ||| || || ||||| | Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTG 155971 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | | ||||| | || ||||| ||||||||||| |||||||| |||||||| || |||| Sbjct 155970 ATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 155911 Query 170657 TCCCACTTGAC 170667 |||| || ||| Sbjct 155910 TCCCTCTAGAC 155900 >seq1564 Length=1404973 Score = 178 bits (196), Expect = 2e-39 Identities = 263/373 (71%), Gaps = 0/373 (0%) Strand=Plus/Minus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| ||||||||||| | |||| | ||| | | ||||| Sbjct 141181 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 141122 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | || ||||| || ||||| || || || || ||||| || | |||||||| | || | Sbjct 141121 TAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 141062 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | | | || || ||||| || ||||||||||| || |||| |||| || || Sbjct 141061 CTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAA 141002 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 || | ||||| || || ||||||||||| ||| | | ||||| ||||| || ||||| | Sbjct 141001 GTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCG 140942 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGAC 170029 |||||||| || || || | | |||||| | | || | || ||||||||| | Sbjct 140941 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 140882 Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||||| | |||| | |||||||| |||||||| ||| ||||| || |||| Sbjct 140881 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTC 140822 Query 170090 CAGTGTCAGCAGC 170102 | || |||| || Sbjct 140821 CTGTTGCAGCTGC 140809 >seq2036 Length=7432206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || || |||||| | |||||||| || ||||||||||||||| ||||||||| ||| Sbjct 2690559 ACTTTCAATTTCATGATTGTATTCCAGGCCAAGCACAACATTCTTACGCACCCATTTCAT 2690500 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTC 170291 ||| ||| || |||||| | |||| || | || ||| || ||||| ||||| Sbjct 2690499 ATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTCTATTCAGTGCTATGCATGGTTC 2690444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582823097819200