Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1576 122 6e-23 seq302 98.7 6e-16 seq1421 96.9 2e-15 seq813 96.9 2e-15 seq268 87.8 1e-12 >seq1576 Length=5940209 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | ||||||||| | ||| ||| ||||| ||||| || || | Sbjct 2986236 CCACCCCTCAAACGGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCG 2986295 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| || |||||||||||||| || || || | ||||||||| | || Sbjct 2986296 AGGGTTCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 2986355 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | || | |||||| Sbjct 2986356 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACT 2986415 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || |||||||| || ||||| ||||||||||| Sbjct 2986416 TCCAGGGTGATTGTCTTACCCGTGAGGGTTTTCACGAAGATCTGCAT 2986462 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| || || | ||| | || | || || Sbjct 2986482 ACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTACGGCCGTCCTCA 2986541 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || | |||||||||| | || | ||||||||||| Sbjct 2986542 AGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGG 2986601 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || ||| || |||| |||||||| || Sbjct 2986602 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTG 2986661 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| ||||||||||| Sbjct 2986662 CCGGTTAGGGTTTTCACGAAGATCTGCAT 2986690 >seq302 Length=4569211 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||||| | | | || | || |||||||| |||||||| || Sbjct 222439 TCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTCCAGCTGCTTTCCGGCGAAG 222498 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||| ||| || || || Sbjct 222499 ATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTCAC--AT 222556 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || || || || | ||||||||| || ||||| || || || Sbjct 222557 --TGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCTTCCCCGTCAGGGTTTT 222614 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 222615 CACGAAGATCTGCATCTT 222632 >seq1421 Length=9127415 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | ||||||||||| ||| || ||||| || || ||||| | Sbjct 1343178 CCTCCCCTCAATCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCT 1343237 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || ||||| |||||||| || || || | |||||||| | || Sbjct 1343238 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGA 1343297 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | ||| | ||||| Sbjct 1343298 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATTGTGTCAGAGCTTTCAACC 1343357 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || || || || || || || ||||| |||||||||||| Sbjct 1343358 TCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATA 1343405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | ||| | |||||||||| ||| || ||||| ||||| ||||| | Sbjct 1342720 TTCCACCCCTGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1342779 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | || |||| || ||||| || || || || || || | || ||||| | | Sbjct 1342780 CAAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGGTCAGGAG 1342839 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| || ||| || ||| | |||| || | |||| Sbjct 1342840 GGATGCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTGTCAATCGTATCCGAGCTTTCAA 1342899 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || ||||| ||||| || |||||||||||| Sbjct 1342900 CCTCCAAGGTAATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATA 1342949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||| |||| ||| || ||||| || || ||||| | Sbjct 1342950 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCT 1343009 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || ||||| |||||||| || || || | ||||||||| | || Sbjct 1343010 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGG 1343069 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| ||| ||| | || | || | ||||| Sbjct 1343070 ATTCCTTCTTTGTCCTGGATCTTAGCTTTCACGTTGTCAATTGTGTCGGAGCTTTCAACC 1343129 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || || || || ||||| ||||| || |||||||||||| Sbjct 1343130 TCCAAGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATA 1343177 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||| |||| || || ||||| || || ||||| | Sbjct 1343406 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 1343465 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || ||||| |||||||| || || || | || |||||| | || Sbjct 1343466 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 1343525 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | || | |||||| Sbjct 1343526 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATTGTGTCGGAGCTCTCAACC 1343585 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || || || || ||||| ||||||||||| Sbjct 1343586 TCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1343632 >seq813 Length=2089867 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| || | ||| | | | |||| |||| || || || ||||| Sbjct 907850 TCCTTCTGGATGTTATAATCAGCTAGGGTCCTTCCATCTTCCAATTGCTTCCCTGCAAAA 907791 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 907790 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATTG 907731 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | ||| | |||||| || | || ||||||||||| ||||| |||||||| Sbjct 907730 TCTATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTTTTTCCGGTGAGGGTCTTCACG 907671 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 907670 AAAATCTGCAT 907660 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | |||||||| | ||| || ||||| ||||| ||||| | Sbjct 907202 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 907143 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || || |||||||||||||| || || |||| |||||||| | || Sbjct 907142 AGGGTACGCCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGA 907083 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| |||||| ||||||| ||| | ||| Sbjct 907082 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGT----TATCGATGGTGTCAGAGCTCTC 907027 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||| || || ||||| || || || || || ||||||||||| Sbjct 907026 CACCTCGAGGGTGATAGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 906976 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || |||||||||||||| || Sbjct 907394 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAG 907335 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| |||||| Sbjct 907334 ATCAGCCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTA 907275 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| ||||| || || ||||| || Sbjct 907274 TCAATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTCTTGACG 907215 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 907214 AAGATCTGCATA 907203 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| || |||| ||| | || |||| ||| Sbjct 907640 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCAAGAGTGCGGCCATCCTCC 907581 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || || | ||||| ||| | || | || |||||||| Sbjct 907580 AGCTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 907521 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||||| || | || ||||| || Sbjct 907520 ATCTTGGCCTTGACGTTATCAATGGTGTCTGAGCTTTCAACCTCCAGTGTGATGGTCTTG 907461 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||| ||||| Sbjct 907460 CCGGTCAGGGTCTTGACGAAGATTTGCAT 907432 >seq268 Length=6919517 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || |||| ||| ||| | || || |||||||| ||||| || Sbjct 3332760 TCCTTCTGAATGTTGTAATCCGCTAGGGTTCTGCCGTCGTCGAGCTGTTTCCCGGCGAAG 3332819 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || ||||| || ||||||| |||||| Sbjct 3332820 ATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATCCTGAATCTTCGCCTTGACGTTG 3332879 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| || || || || || || || || |||||| Sbjct 3332880 TCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGTAAGGGTTTTCACA 3332939 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 3332940 AAGATTTGCAT 3332950 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||| | ||| ||| ||||| || || || || | ||| ||||| | || || Sbjct 3332285 AACGAGGTGGAGTGTTGATTCCTTCTGTATATTGTAATCAGCTAGGGTTCGTCCGTCCTC 3332344 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| ||||| || || | ||| ||||| || |||| | ||||||||||| Sbjct 3332345 GAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTG 3332404 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||| | |||| || | ||| || |||| || || || || Sbjct 3332405 AATCTTAGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCGAGAGTAATCGTCTT 3332464 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| ||||||||||| Sbjct 3332465 ACCAGTCAAGGTTTTCACGAAGATCTGCAT 3332494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620076778704