Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3418 637 5e-178 seq2653 233 2e-56 seq2647 226 3e-54 seq1564 226 3e-54 seq3417 210 2e-49 seq2036 104 3e-17 >seq3418 Length=161897 Score = 637 bits (706), Expect = 5e-178 Identities = 726/972 (75%), Gaps = 2/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 589 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 648 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 649 ATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGATTGGTTGAAATTG 708 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || || || || || |||||||| ||||| | ||| | ||||| ||||| || || || Sbjct 709 AAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 768 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | |||||| |||||||| |||||| ||| Sbjct 769 ACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGG 828 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 829 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 888 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | ||| || |||||||||| ||||| | ||| | | |||| Sbjct 889 CCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 948 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 949 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 1008 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||| ||||| || |||||||| ||||| || || |||||||| |||| |||| | ||| Sbjct 1009 AACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAATTG 1068 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| || || |||| || || Sbjct 1069 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCGATTGGGTAG 1128 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| || || | || |||||||| ||||| ||||| |||||| ||||| || Sbjct 1129 ATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGG 1188 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 1189 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 1248 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| |||| |||||| || || || |||| |||||| || | | Sbjct 1249 AAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGAT 1308 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || |||| ||| ||||| ||| | |||| | ||| Sbjct 1309 GCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAGAAGTCGGAATAATAGCA 1368 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 1369 CCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAGGTTCACGAATACCATCA 1428 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1429 ATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGA-AGTTGCGGTCAATAA 1487 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| || ||||| | | |||||||| |||| || | |||||| | |||| ||| | Sbjct 1488 AGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTAT 1547 Query 84944 CCAATCACAGAA 84955 ||| | |||||| Sbjct 1548 CCAGTTACAGAA 1559 >seq2653 Length=4899193 Score = 233 bits (258), Expect = 2e-56 Identities = 283/385 (74%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263 |||||||| |||||| || ||||| | || || || || || |||||||| || ||| Sbjct 3225817 TTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 3225758 Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323 ||||||||||| || ||||||||||| ||||||| | ||| | |||||||||| Sbjct 3225757 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGTG 3225698 Query 84324 GTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383 ||||| ||| | | |||||| || | ||||||||||| ||| |||||| | || Sbjct 3225697 GTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 3225638 Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCA--------TAAGGATGTTAT 84435 |||||||||||||| || || ||||| ||||| || |||| |||| ||||| | Sbjct 3225637 CCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTTGT 3225578 Query 84436 GTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCAT 84495 | | |||||||| |||| |||| | ||||| || || ||||| || || ||||| |||| Sbjct 3225577 GCTTAGCCTGGAATACAATCATG-AATTGAAAGTACCAGAGATTCCTAGAGGCATACCAT 3225519 Query 84496 CAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTG 84555 |||| ||| || || |||| || || | | ||| || || | || |||||||| | Sbjct 3225518 CAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAG 3225459 Query 84556 GAGCAGAGTAAGCAACACAGATCCA 84580 |||| ||||| |||||| ||||| Sbjct 3225458 GAGCTGAGTATGCAACAGCAATCCA 3225434 >seq2647 Length=4788780 Score = 226 bits (250), Expect = 3e-54 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 84129 GTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAG 84188 ||||| | ||| | ||||| ||||| || || | || |||||||||| ||||| ||| Sbjct 734076 GTGCTGATACCTAAAGCAGTGAACCAGATACCTGCTACAAGCCAAGCAGCTAAGAAGAAG 734135 Query 84189 TGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCG 84248 || | |||||| |||||||| |||||| | |||||| | || || || || || Sbjct 734136 TGTAACGAACGAGAGTTGTTGAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCA 734195 Query 84249 TGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGT 84308 ||| || | || |||||||||| | | || ||||||||||| |||||||| | ||| Sbjct 734196 TGAACAACTACGATATTATAAGGT-CTTCCTCTTGACCGAATTTGTAACCTTCGTTAGCA 734254 Query 84309 GAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCA 84368 || |||||| | | ||||| | ||| | | |||| | || | ||||||||||| || Sbjct 734255 GATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTACCAAGGAACCATGCATAACA 734314 Query 84369 GAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGG 84428 |||||| | || |||||||||| ||| || || | ||| || || || |||||||| Sbjct 734315 CTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATCATATGGAATGGGTGCATAAGA 734374 Query 84429 ATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGC 84488 ||||| || || ||||||| |||| |||| | ||||| || | ||||| || || ||| Sbjct 734375 ATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAAGTACTAGAGATTCCTAGAGGC 734434 Query 84489 ATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAG 84537 || |||||||| ||| || || |||| || || | || ||| |||| Sbjct 734435 ATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGATAA-GAAAACAG 734482 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||| | || |||| ||| ||||| |||||||||||||| ||| | |||| Sbjct 733611 GGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCATGGTTAATG 733670 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| | | | || ||||| || Sbjct 733671 ATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACAGATTGGTTGAAATTG 733730 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCT 84133 || || || || || |||||||| || || Sbjct 733731 AAACCGTTTAGGTTGAATGCCATAGTACT 733759 >seq1564 Length=1404973 Score = 226 bits (250), Expect = 3e-54 Identities = 276/374 (74%), Gaps = 2/374 (1%) Strand=Plus/Plus Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || |||||||| ||||| ||||| |||||| ||||| || |||||||| ||||| | Sbjct 140809 GCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 140868 Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||| ||||||||||||||| | | |||||| | |||||| | |||| Sbjct 140869 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 140928 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722 |||| |||||| || || || |||| |||||| || | ||| ||||||||||| || Sbjct 140929 AGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAAATTGGG 140988 Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782 || || |||| || ||||| ||| | |||| | |||||||| || || ||||| Sbjct 140989 TAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTC 141048 Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 ||||| | ||||| |||| || || ||||| ||||| |||||||| ||||| || ||| Sbjct 141049 CCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 141108 Query 84843 CCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGT 84901 ||| ||| || || || || ||||| ||| || | | || ||| || ||||| | | Sbjct 141109 GCAATGAAGGCTATAATAAATACAGA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAAC 141167 Query 84902 TCCAAACCAACCAA 84915 |||||||| |||| Sbjct 141168 ACCAAACCATCCAA 141181 >seq3417 Length=265768 Score = 210 bits (232), Expect = 2e-49 Identities = 229/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 155907 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 155966 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || || | || ||| ||||||||| || | || ||||| || Sbjct 155967 ATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTATCAACTACGGATTGGTTGAAATTT 156026 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 | ||||| || || |||||||| ||||| | ||| | ||||| ||||| || || || Sbjct 156027 CAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCCACT 156086 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | |||||| |||||||| |||||| ||| Sbjct 156087 ACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGG 156146 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || |||||||| || ||||||||||||| || |||||| Sbjct 156147 AAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTATAAGTTTATTCCTCTTGA 156206 Query 84285 CCGA 84288 |||| Sbjct 156207 CCGA 156210 >seq2036 Length=7432206 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||||||||||| ||| |||||||| ||| ||||||||||||| || || | ||| ||| Sbjct 2690444 GAACCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGA 2690503 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTT 84470 || || ||| |||| ||||| || | |||||||| |||| |||| | ||||| ||| Sbjct 2690504 AATGGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGTT 2690560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571249192335440