Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq179 107 2e-18 seq656 86.0 7e-12 >seq179 Length=2504955 Score = 107 bits (118), Expect = 2e-18 Identities = 543/854 (64%), Gaps = 21/854 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA--TGATATAC 18727 || |||||||| |||| || || ||||||||||| || ||||||| ||| |||| | Sbjct 2366140 TTCTGATATTCTCCAACCCTCTTCTCAAAGAAATTGGTCTTTCCCTGTAAGCTGATCAGC 2366199 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||||| ||||| | ||||| || || || || |||| ||| | || Sbjct 2366200 --TCCATCCAATCAAACGGATTCTGAACATTGTACATCTTACTGCATCCCAATGCACCTA 2366257 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | | |||||| || ||||||| || ||| | |||||| ||| | |||||| || | | Sbjct 2366258 GCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATCCCCACCA 2366317 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | | || || || || | ||||| || |||| || || || | | || Sbjct 2366318 AAGCACAGGGAAGCGCGTCACACACGAATTCCCTCTCAATATCAACAGCTTCAGCCACAA 2366377 Query 18908 TAGATACAACTCTATCTTC-ATTAGGAGGGT--ATAGAAGATGTTTAAACATCAAACATG 18964 || || | || || | | | || || | | | ||| |||| Sbjct 2366378 GTGACTTCACGCGCTCCTCGCTCAACTTCCTCCTCAGCAGCCCGT---AGAGCAAGCATG 2366434 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 | ||||| || || | ||||| |||| ||||| ||||| || || | || || | Sbjct 2366435 CGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCG 2366494 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 ||||||| || | ||||| | ||||||||| | | ||| || || ||||| || | Sbjct 2366495 GCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAGATCC 2366554 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAAT 19142 | || || ||||| || | | | || | || | | | | || ||| Sbjct 2366555 CCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGATTCCGAGC-----CATCAAT 2366609 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 ||| || ||||| | ||||||||| | ||||| |||| || || || | | || Sbjct 2366610 CCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAA 2366669 Query 19203 TAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | | | | ||| || | ||| || | || | || | || | ||||||||| | Sbjct 2366670 CA-ACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCT 2366728 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || || ||||| || || || ||||| ||||||||||| | || || | | || Sbjct 2366729 CAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGCAACCT 2366788 Query 19322 GTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | || || || || || | | || | | ||| || ||| || || || || ||| Sbjct 2366789 GGACCTC-CTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCA 2366847 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||| || | || || |||||||| || || || || ||||||| | | ||| | | Sbjct 2366848 AAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCACTGA 2366907 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | ||| | ||| | ||| || || || | ||||| ||||| || | ||||| || Sbjct 2366908 CGGAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACGCGACGGCTTTCTTG 2366967 Query 19501 TACATGTTCCATAT 19514 ||||| | ||| || Sbjct 2366968 TACATCTCCCAGAT 2366981 >seq656 Length=2434700 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 47342 TAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAA 47401 ||| |||||||||||||| || ||| ||| ||||| || | | ||||||||||||||| Sbjct 847356 TAGAACTCTACGGCTATAGATGTTAGATGTGTATGGCTCAAAACATTCATTATTTCCAAG 847415 Query 47402 AATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG-CTATTTCTTACTCCAT 47460 |||||| ||||| || || ||||| | || | || ||| |||||| ||||||| Sbjct 847416 AATTTGGCTGGTTGAAGCAGTGGGCATTGGGGCTA-AAAGAAGAGAATTTCTCACTCCAT 847474 Query 47461 ATTTTTGTATC 47471 |||| |||| Sbjct 847475 TCTTTTCTATC 847485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084783901520