Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3418 486 6e-133 seq3417 188 2e-43 seq2653 172 2e-38 seq2647 150 5e-32 >seq3418 Length=161897 Score = 486 bits (538), Expect = 6e-133 Identities = 704/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1559 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1500 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | |||||||| || || | Sbjct 1499 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTC 1442 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || | | |||||||||| Sbjct 1441 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACA 1382 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || |||| |||||||| | Sbjct 1381 ATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAA 1322 Query 26040 TCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | |||||||| |||| | | || || ||| ||||||| ||||| || ||| |||| ||| Sbjct 1321 TTTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATT 1263 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 1262 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 1203 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| | || ||||| ||||||||| |||| || | | || ||| | Sbjct 1202 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACC 1143 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 ||||| ||||| | || || |||| || || |||||| |||||| |||||||| || Sbjct 1142 GCAGTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1083 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| || || ||| | |||||||| || || || || || || |||||| Sbjct 1082 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 1023 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 ||||| |||||| || || ||||| || ||||| || | || ||| ||||||||| Sbjct 1022 CCATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 963 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| ||||| | || ||||| ||||| | | || || | Sbjct 962 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 903 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || |||||||| || ||||| || || || ||| Sbjct 902 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 843 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || ||| ||||| | || ||||| | Sbjct 842 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTA 783 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | |||||| |||| |||||||| Sbjct 782 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTC 723 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 |||||||| ||||| || || ||||| || ||||| ||| | | || |||| | Sbjct 722 AACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAAT 663 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | ||||| |||||||| || | ||||||||||| || |||||| Sbjct 662 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 603 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 602 GCTCATAACTTCCCTCTAGACCTAGC 577 >seq3417 Length=265768 Score = 188 bits (208), Expect = 2e-43 Identities = 230/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 26471 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATT 26530 || ||||| ||| | || |||||||| || ||||| || || ||||| |||| || Sbjct 156208 GGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGATC 156149 Query 26531 TTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCG 26590 || || ||||| ||||| || ||| ||||| | || ||||| | ||| ||||||| Sbjct 156148 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCT 156089 Query 26591 GTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGT 26650 || || || || ||| | || || | |||||| |||| |||||||| |||||||||||| Sbjct 156088 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGT 156029 Query 26651 TTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGAT 26710 | || || ||||| || ||||| ||| | || |||| || ||||||||| Sbjct 156028 TGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTGAT 155969 Query 26711 GTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTT 26770 | | ||||| |||||||| || | ||||||||||| || ||||||||||||||||| Sbjct 155968 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 155909 Query 26771 CCACTTGACTTAGC 26784 || || ||| |||| Sbjct 155908 CCTCTAGACCTAGC 155895 >seq2653 Length=4899193 Score = 172 bits (190), Expect = 2e-38 Identities = 272/387 (70%), Gaps = 11/387 (3%) Strand=Plus/Plus Query 26177 TGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTAT 26236 ||||| ||||||||| |||| || | | || ||| |||||| ||||| | || Sbjct 3225434 TGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTAC 3225493 Query 26237 CCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAAC 26296 || |||| || || |||||| |||||| |||||||| || |||||||||||||| || Sbjct 3225494 CCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA- 3225552 Query 26297 TTTATGTTCGTATTCC-----AAGCAGAACA----TAATATACTCATGCACCCATTCCAT 26347 || ||| | ||||||| ||||| |||| |||| | || ||||||||||| ||| Sbjct 3225553 TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAAT-TTCTTATGCACCCATTTCAT 3225611 Query 26348 ATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTG 26407 ||| || || ||||| || ||||| || | || ||| ||||||||| || ||| Sbjct 3225612 ATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 3225671 Query 26408 GTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAG 26467 || ||||| | || ||||| ||||| | | | || | || || | Sbjct 3225672 GTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAGA 3225731 Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 || || ||||| ||||| || |||||||| || ||||| || || || ||||| |||| Sbjct 3225732 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 3225791 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAAC 26554 || ||||| ||||| ||||| || ||| Sbjct 3225792 ATCTTTCAATATGCTAGTTTCAACAAC 3225818 >seq2647 Length=4788780 Score = 150 bits (166), Expect = 5e-32 Identities = 279/407 (69%), Gaps = 2/407 (0%) Strand=Plus/Minus Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || |||||| | || || |||| || || |||||| |||||| |||||||| || ||| Sbjct 734480 GTTTTCTTA-TCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 734422 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||| ||||||| || || ||| | |||||||| | || || || || || ||||||||| Sbjct 734421 TCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCA 734362 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 ||||||||| || || ||| | || ||||| || | || ||| || |||||| || Sbjct 734361 TTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGT 734302 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||| | ||| | || ||||| | | | | | || || | || Sbjct 734301 TCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGT 734242 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || || || || ||||| ||||| | |||||||| || | || || || || ||||| Sbjct 734241 TACAAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTTTGGC 734183 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || | ||||| ||||| || ||| ||||| | || ||||| | ||| Sbjct 734182 CGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCT 734123 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCAC 26628 |||||| || | || || ||| | || || | |||||| |||| Sbjct 734122 GCTTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGTATCAGCAC 734076 Score = 102 bits (112), Expect = 2e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 26621 ATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTT 26680 ||| | || |||||||| |||||||| ||||| || || ||||| || ||| | ||| | Sbjct 733762 ATCAGTACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGT 733703 Query 26681 AATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAA 26740 | || |||| ||| ||||||||| | | |||| |||||||| || | ||| Sbjct 733702 CAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAA 733643 Query 26741 GTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||| || ||||||||| |||||| || || ||| |||| Sbjct 733642 GTTATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGC 733599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146720444558832