Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3418 535 1e-147 seq1564 205 3e-48 seq2647 185 3e-42 seq2653 179 1e-40 seq3417 172 2e-38 seq2036 96.9 1e-15 >seq3418 Length=161897 Score = 535 bits (592), Expect = 1e-147 Identities = 712/989 (72%), Gaps = 0/989 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 573 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 632 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || ||||||||||| | || | || | |||||| || Sbjct 633 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 692 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || ||||| || || || ||||||||| || || | ||| || Sbjct 693 GGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGT 752 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||| | |||||| ||||| || || || Sbjct 753 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 812 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 813 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 872 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | ||| ||||||| | || ||||| Sbjct 873 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 932 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 933 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 992 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||| || || || || | |||||| || || |||||||| || ||||| || ||||| || Sbjct 993 TACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 1052 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| || Sbjct 1053 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1112 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 || || | ||||||| ||||| || || || ||||||||||| ||||| || || Sbjct 1113 CTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGC 1172 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || | |||||| || | ||||||||||||| | || |||| ||| Sbjct 1173 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1232 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | ||||| | ||||| | ||||| |||| ||| || || ||||| ||||| Sbjct 1233 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAA 1292 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || || | || ||| |||||||| |||||||| ||||| | ||| || || || Sbjct 1293 CCATTCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAGA 1352 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || |||||||| || |||||||| || || | | ||| || ||||| Sbjct 1353 AGTCGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAGG 1412 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| ||||| || ||||| ||||||| || || || | |||| | | Sbjct 1413 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGA 1472 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 1473 AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1532 Query 36929 GTTTGTACTTGTAACCCAGTCACATAAAC 36957 | || || || | ||||| ||| |||| Sbjct 1533 TTCAGTGCTGGTTATCCAGTTACAGAAAC 1561 >seq1564 Length=1404973 Score = 205 bits (226), Expect = 3e-48 Identities = 268/371 (72%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || ||||||||||| ||||| || || ||| ||||| || | |||||| || | || Sbjct 140809 GCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 140868 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 ||||||||||| | || |||| |||| | | ||||| | ||||| | ||||| Sbjct 140869 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 140928 Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722 |||| ||| || || ||||| |||||||| || || | || ||| |||||||| |||||| Sbjct 140929 AGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAAATTGGG 140988 Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782 || ||||| | || || || || | || | || || |||||||| || ||||| Sbjct 140989 TAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTC 141048 Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842 || || |||| | ||| || ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 141049 CCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 141108 Query 36843 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 36902 |||| || || || | |||| | | ||| || || | | ||||||||| | || Sbjct 141109 GCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 141168 Query 36903 CCAAACCACCC 36913 |||||||| || Sbjct 141169 CCAAACCATCC 141179 >seq2647 Length=4788780 Score = 185 bits (204), Expect = 3e-42 Identities = 266/370 (72%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 36169 GCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGA 36228 |||||||||| | |||||| ||||| || || || || |||||||| | ||||| Sbjct 734116 GCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTAGAAGA 734175 Query 36229 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 36288 | | || ||||| || |||||| | | || || ||||| | ||||| ||||| |||| Sbjct 734176 TCAATCGGCCAAAATAACCATGAACAACTACGATATTATAAGG-TCTTCCTCTTGACCGA 734234 Query 36289 ATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT-AAGTGAGGAAGTA 36347 |||| || || | ||| ||||||| | ||||| | || || || || || Sbjct 734235 ATTTGTAACCTTCGTTAGCAGATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTA 734294 Query 36348 ACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGC 36407 |||| || |||||| || ||||| | || |||||||| | || || || | | Sbjct 734295 CCAAGGAA-CCATGCATAACACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATC 734353 Query 36408 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 36467 |||||||| || |||||||| || ||||| || |||| || |||| ||| ||||||||| Sbjct 734354 ATATGGAATGGGTGCATAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAA 734413 Query 36468 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 36527 || | || || || ||||||||||||||||| ||||| || || || | ||||||| | Sbjct 734414 GTACTAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGA-T 734472 Query 36528 AAGAATACAG 36537 ||||| |||| Sbjct 734473 AAGAAAACAG 734482 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || |||||||| | || |||| ||||||||||||||||| || | || Sbjct 733599 GCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 733658 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 ||| |||||| || ||||||||||| | || | || | ||||| || || Sbjct 733659 GCATGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACAGAT 733718 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 36130 || ||||| || || ||||| || || || |||||||| Sbjct 733719 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGT 733756 >seq2653 Length=4899193 Score = 179 bits (198), Expect = 1e-40 Identities = 271/385 (70%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| || ||||| | || ||||| || |||||||| || || || Sbjct 3225817 TTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 3225758 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | ||| | ||||| | || Sbjct 3225757 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGTG 3225698 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 ||||| || | ||||| || | || ||||||||| ||||| | || Sbjct 3225697 GTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 3225638 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGA--------TATTGT 36435 |||||||| || || || || | |||||| || || |||||||| | | |||| Sbjct 3225637 CCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTTGT 3225578 Query 36436 GTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCAT 36495 | | ||||| || |||| ||| || |||||||| || || || || ||||||||||||| Sbjct 3225577 GCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACCAT 3225519 Query 36496 CAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAG 36555 |||| ||||| || || || | ||||||| ||||| || || || |||||||||| Sbjct 3225518 CAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAG 3225459 Query 36556 GGGCTGAATAAGCTACACATATCCA 36580 | ||||| || || ||| ||||| Sbjct 3225458 GAGCTGAGTATGCAACAGCAATCCA 3225434 >seq3417 Length=265768 Score = 172 bits (190), Expect = 2e-38 Identities = 230/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 155891 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 155950 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || ||||||||||| | || | || | | |||||| || Sbjct 155951 GTTAGCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTATCAACTAC 156010 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || | || || || || || ||||||||| || || | ||| || Sbjct 156011 GGATTGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGT 156070 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||| | |||||| ||||| || || || Sbjct 156071 GAACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 156130 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||| || || || ||||| Sbjct 156131 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTATA 156190 Query 36269 CGTCTCTTCTTCTTGGCCGA 36288 || | ||| ||||| |||| Sbjct 156191 AGTTTATTCCTCTTGACCGA 156210 >seq2036 Length=7432206 Score = 96.9 bits (106), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| || ||| ||||||| || || ||||| |||||||| || Sbjct 2690447 CCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGAAAT 2690506 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 36469 || ||| |||| || ||||| | ||||| || |||| ||| ||||||||||| Sbjct 2690507 GGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGT 2690559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150448293243972