Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3418 554 1e-153 seq3417 196 1e-45 seq2653 194 5e-45 seq1564 190 6e-44 seq2647 178 4e-40 seq2036 91.5 4e-14 >seq3418 Length=161897 Score = 554 bits (614), Expect = 1e-153 Identities = 721/992 (73%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 573 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 632 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAAC 5307 ||| |||||||| | || ||| |||||||| || || || || | || | |||| Sbjct 633 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAA---TTACACGGCCTTGACTATCAAC 689 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| || || || ||||||||| ||| || | || Sbjct 690 TACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGC 749 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||| | |||||| ||||| ||| || Sbjct 750 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTT 809 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || ||||| || |||||||| || || || || Sbjct 810 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATT 869 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| |||||||||||||| |||||| | || || | ||| ||| | | || || Sbjct 870 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGT 929 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | |||||| || | |||||||||||| ||| | | || || Sbjct 930 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 989 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| || || | ||| || || || |||||||| || ||||| || ||||| Sbjct 990 GAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTG 1049 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||| || || |||||||||||||| || ||||||||||||||| ||||| Sbjct 1050 GAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACT 1109 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787 |||||| |||| ||||| | || || |||| | || || ||||| || ||||| || Sbjct 1110 TCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTA 1169 Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847 ||| || |||||| || ||||| || | | | ||||||||||||| | || |||| Sbjct 1170 TGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1229 Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907 |||| || | ||||| | |||||| | || | |||| || || || || ||||| Sbjct 1230 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTA 1289 Query 5908 AAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCG 5965 | ||||||||| | ||| || |||||||| || || || |||||||| || || || Sbjct 1290 TAACCATTCATCAACGGAT--GCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCT 1347 Query 5966 TTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCG 6025 || | || | || || || || || || |||||||| || || |||||||| | Sbjct 1348 GCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAA 1407 Query 6026 ACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAAT 6085 || |||||||| || || || || || ||||| || ||||| | ||| |||| |||||| Sbjct 1408 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 1467 Query 6086 GCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGG 6145 ||| ||||||||| || | | || ||||| || ||||||||||| || | || || Sbjct 1468 ACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1527 Query 6146 CGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| | ||||| || | ||||| |||||| Sbjct 1528 CGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1559 >seq3417 Length=265768 Score = 196 bits (216), Expect = 1e-45 Identities = 238/323 (74%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 155891 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 155950 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 ||| |||||||| | || ||| |||||||| || | | || |||| ||||| Sbjct 155951 GTTAGCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTA---TCAAC 156007 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || | || || || || || ||||||||| ||| || | || Sbjct 156008 TACGGATTGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGC 156067 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||| | |||||| ||||| ||| || Sbjct 156068 AGTGAACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTT 156127 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || ||||| || |||||| || || || || Sbjct 156128 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATT 156187 Query 5488 ATACGTTTCTTCCTCTTGGCCGA 5510 ||| |||| ||||||||| |||| Sbjct 156188 ATAAGTTTATTCCTCTTGACCGA 156210 >seq2653 Length=4899193 Score = 194 bits (214), Expect = 5e-45 Identities = 274/385 (71%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| || ||||| | || ||||| || |||||||| || || || Sbjct 3225817 TTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 3225758 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | ||| | | | | || Sbjct 3225757 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGTG 3225698 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| || | |||||| || | |||||||||||| ||| | | || Sbjct 3225697 GTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 3225638 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGA--------TATTGT 5657 |||||||| ||||| || || | ||| || || || |||||||| | | |||| Sbjct 3225637 CCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTTGT 3225578 Query 5658 GTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCAT 5717 | | ||||||||||| | ||| || || |||||||||||||| || ||||||||||||| Sbjct 3225577 GCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACCAT 3225519 Query 5718 CACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCG 5777 || ||||||||||| |||| ||||| | || || |||| | || || ||||| | Sbjct 3225518 CAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAG 3225459 Query 5778 GTGCTGAATATGCTACGCAAATCCA 5802 | ||||| ||||| || |||||| Sbjct 3225458 GAGCTGAGTATGCAACAGCAATCCA 3225434 >seq1564 Length=1404973 Score = 190 bits (210), Expect = 6e-44 Identities = 267/373 (72%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 5765 GCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAA 5824 || || ||||| || ||||| ||||| || |||||| || ||||| || | | | || Sbjct 140809 GCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 140868 Query 5825 CTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACG 5884 ||||||||||| | || |||| |||| || | ||||| | |||||| | || | Sbjct 140869 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 140928 Query 5885 AGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGG 5942 |||| || || || || ||||| | ||||||||| | ||| || |||||||| || | Sbjct 140929 AGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGAT--GCCGCTTCCCAAATTG 140986 Query 5943 GATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGT 6002 | || |||||||| | || || || | || | || || || || || || |||| Sbjct 140987 GGTAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGT 141046 Query 6003 TTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTG 6062 | || || ||||||||||| | || |||||||| || || || || || ||||| || | Sbjct 141047 TCCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG 141106 Query 6063 CAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGA 6122 |||| | ||| |||| |||||| ||| ||||||||| || | | || ||||| || | Sbjct 141107 CAGCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA 141166 Query 6123 CACCAAACCACCC 6135 |||||||||| || Sbjct 141167 CACCAAACCATCC 141179 >seq2647 Length=4788780 Score = 178 bits (196), Expect = 4e-40 Identities = 263/370 (71%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 5391 GCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGA 5450 |||||| ||| | |||||| ||||| ||| ||||| || |||||||| | ||||| Sbjct 734116 GCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTAGAAGA 734175 Query 5451 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGA 5510 | | || ||||| || |||||| | | || || ||||| | | |||||||||| |||| Sbjct 734176 TCAATCGGCCAAAATAACCATGAACAACTACGATATTATAAGGT-CTTCCTCTTGACCGA 734234 Query 5511 ATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAA 5570 |||| || || | ||| ||| | | ||||| | || | |||| | | Sbjct 734235 ATTTGTAACCTTCGTTAGCAGATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTA 734294 Query 5571 CAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCA 5630 | | ||||||||| || ||| | | || |||||||| | ||| || || | || Sbjct 734295 CCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATCA 734354 Query 5631 TGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAG 5690 | ||||| || |||||||| || ||||| || |||||||||| | ||| || || |||| Sbjct 734355 TATGGAATGGGTGCATAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAAG 734414 Query 5691 TACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTA 5750 ||| |||||| || ||||||||||||||| ||||||||||| |||| ||||| | || Sbjct 734415 TACTAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGA-TA 734473 Query 5751 AAAATACTGA 5760 | || || || Sbjct 734474 AGAAAACAGA 734483 Score = 98.7 bits (108), Expect = 3e-16 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||| ||||||| | ||| ||||| ||||||||||||||||| Sbjct 733599 GCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 733658 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAACGACT 5311 ||| |||| | || ||| |||||||| | ||| || | || || |||| || Sbjct 733659 GCATGGTTAATGATATCAGCCCAAGT---ATTAATTACACGGCCTTGACTATCAATTACA 733715 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGT 5352 || || ||||| || || ||||| || || || |||||||| Sbjct 733716 GATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGT 733756 >seq2036 Length=7432206 Score = 91.5 bits (100), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | || ||| ||||||| ||||| ||||| ||||| || || Sbjct 2690447 CCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGAAAT 2690506 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGT 5691 || ||| |||| || ||||| | ||||||||||| | ||| || || ||||| Sbjct 2690507 GGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGT 2690559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152643404143548