Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3418 524 2e-144 seq1564 192 2e-44 seq2647 188 2e-43 seq2653 179 1e-40 seq3417 174 5e-39 seq2036 96.9 1e-15 >seq3418 Length=161897 Score = 524 bits (580), Expect = 2e-144 Identities = 707/985 (72%), Gaps = 0/985 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 577 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 636 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 637 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGAT 696 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || || ||||||||| || || | ||| || | | Sbjct 697 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 756 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 757 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 816 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 817 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 876 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | ||| ||||||| | || ||||| | Sbjct 877 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 936 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 937 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 996 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | |||||| || || |||||||| || ||||| || ||||| || ||| Sbjct 997 CCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 1056 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| ||||||||||| || || || || ||||||||||||||||| ||||| || || Sbjct 1057 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 1116 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||||| ||||| || || || ||||||||||| ||||| || || ||| Sbjct 1117 CCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAACA 1176 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 1177 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1236 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| |||| ||| || || ||||| || ||||| Sbjct 1237 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCAT 1296 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || ||| |||||||| |||||||| ||||| | ||| || || ||| | | Sbjct 1297 TCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAGAAGTC 1356 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || ||||| || |||||||| || || | | ||| || ||||| ||| Sbjct 1357 GGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAGGTTCA 1416 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | | Sbjct 1417 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTT 1476 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1477 GCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1536 Query 26413 GTACTTGTAACCCAGTCACATAAAC 26437 || || || | ||||| ||| |||| Sbjct 1537 GTGCTGGTTATCCAGTTACAGAAAC 1561 >seq1564 Length=1404973 Score = 192 bits (212), Expect = 2e-44 Identities = 265/371 (71%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || ||||||||||| ||||| || || ||| ||||| || | ||| || || | || Sbjct 140809 GCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 140868 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||||||||| | || |||| |||| | | || | | ||||| | ||||| Sbjct 140869 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 140928 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 |||| ||| || || ||||| || ||||| || || | || ||| |||||||| |||||| Sbjct 140929 AGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAAATTGGG 140988 Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262 || ||||| | || || || ||| | ||| | || || || ||||| || ||||| Sbjct 140989 TAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTC 141048 Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322 || || |||| | ||| || ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 141049 CCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 141108 Query 26323 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 26382 |||| || || || | |||| | | ||| || || | | ||||||||| | || Sbjct 141109 GCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 141168 Query 26383 CCAAACCACCC 26393 |||||||| || Sbjct 141169 CCAAACCATCC 141179 >seq2647 Length=4788780 Score = 188 bits (208), Expect = 2e-43 Identities = 267/370 (72%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 25649 GCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGA 25708 |||||||||| | |||||| ||||| ||| || || || |||||||| | ||||| Sbjct 734116 GCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTAGAAGA 734175 Query 25709 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 25768 | | || ||||| || |||||| | | || || ||||| | ||||| ||||| |||| Sbjct 734176 TCAATCGGCCAAAATAACCATGAACAACTACGATATTATAAGG-TCTTCCTCTTGACCGA 734234 Query 25769 ATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT-AAGTGAGGAAGTA 25827 |||| || || | ||| ||||||| | ||||| | || || || || || Sbjct 734235 ATTTGTAACCTTCGTTAGCAGATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTA 734294 Query 25828 ACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGC 25887 |||| || |||||| || ||||| | || |||||||| | || || || | | Sbjct 734295 CCAAGGAA-CCATGCATAACACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATC 734353 Query 25888 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 25947 |||||||| || |||||||| || ||||| || |||| || |||| ||| ||||||||| Sbjct 734354 ATATGGAATGGGTGCATAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAA 734413 Query 25948 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 26007 || | || || || ||||||||||||||||| ||||| || || || | ||||||| | Sbjct 734414 GTACTAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGA-T 734472 Query 26008 AAGAATACAG 26017 ||||| |||| Sbjct 734473 AAGAAAACAG 734482 Score = 91.5 bits (100), Expect = 4e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| | || |||| ||||||||||||||||| || | || Sbjct 733599 GCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 733658 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||| |||||| || ||||||||||| | || | || | ||||| || || Sbjct 733659 GCATGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACAGAT 733718 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 25610 || ||||| || || ||||| || || || |||||||| Sbjct 733719 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGT 733756 >seq2653 Length=4899193 Score = 179 bits (198), Expect = 1e-40 Identities = 271/385 (70%), Gaps = 9/385 (2%) Strand=Plus/Minus Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| || ||||| | || ||||| || |||||||| || || || Sbjct 3225817 TTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 3225758 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | ||| | ||||| | || Sbjct 3225757 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGTG 3225698 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 ||||| || | ||||| || | || ||||||||| ||||| | || Sbjct 3225697 GTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 3225638 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGA--------TATTGT 25915 |||||||| || || || || | |||||| || || |||||||| | | |||| Sbjct 3225637 CCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTTGT 3225578 Query 25916 GTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCAT 25975 | | ||||| || |||| ||| || |||||||| || || || || ||||||||||||| Sbjct 3225577 GCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACCAT 3225519 Query 25976 CAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAG 26035 |||| ||||| || || || | ||||||| ||||| || || || |||||||||| Sbjct 3225518 CAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAG 3225459 Query 26036 GGGCTGAATAAGCTACACATATCCA 26060 | ||||| || || ||| ||||| Sbjct 3225458 GAGCTGAGTATGCAACAGCAATCCA 3225434 >seq3417 Length=265768 Score = 174 bits (192), Expect = 5e-39 Identities = 228/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 155895 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 155954 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | | |||||| || || Sbjct 155955 GCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTATCAACTACGGAT 156014 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || | || || || || || ||||||||| || || | ||| || | | Sbjct 156015 TGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 156074 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 156075 CAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 156134 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||| || || || ||||| || Sbjct 156135 CTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTATAAGTT 156194 Query 25753 TCTTCTTCTTGGCCGA 25768 | ||| ||||| |||| Sbjct 156195 TATTCCTCTTGACCGA 156210 >seq2036 Length=7432206 Score = 96.9 bits (106), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| || ||| ||||||| || || ||||| |||||||| || Sbjct 2690447 CCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGAAAT 2690506 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 25949 || ||| |||| || ||||| | ||||| || |||| ||| ||||||||||| Sbjct 2690507 GGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGT 2690559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151987430769768