Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1830 111 1e-19 seq268 107 1e-18 seq1576 93.3 3e-14 seq1421 89.7 4e-13 seq1361 89.7 4e-13 >seq1830 Length=882674 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||||||||| || || ||| |||| ||| ||||| || | Sbjct 346651 GCCTCCCCTCAGTCGCAGCACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGC 346710 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || || | |||||| || ||||| ||||||||||| ||||| | ||| Sbjct 346711 AAGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGG 346770 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| |||||||| ||||||| ||| || | | | ||||| |||||| Sbjct 346771 AATGCCTTCCTTGTCCTGAATCTTTGCTTTAACGTTGTCAATTGTATCTGAGCTCTCCAC 346830 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || | || || || ||||| ||||||||| Sbjct 346831 TTCCAATGTGATGGTCTTCCCTATTAAGGTCTTGACAAAGATCTGCATC 346879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||| ||||| || || ||| || ||||||||||| || | Sbjct 346880 CCTCCCCTCAGGCGCAGCACTAAATGGAGTGTTGACTCCTTCTGAATATTGTAGTCTGCA 346939 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | | || || | |||||| |||||||| ||||| | ||| || || | |||| Sbjct 346940 AGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 346999 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || |||||| ||| ||| | | | ||||| | || ||| Sbjct 347000 ATGCCTTCCTTATCTTGGATCTTTGCTTTAACATTGTCAATGGTATCTGA-ACTTCAACC 347058 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || ||||| || | || || ||||| ||||||||| Sbjct 347059 TCAAGTGTGATGGTCTTTCCTGTGAGTGTCTTCACAAAGATCTGCATC 347106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/230 (69%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTT--TTTGAATATTGTAATCAG 48597 || ||||| || |||| ||||||||| || || | ||| ||||||| ||||| || | Sbjct 346427 CCTCCCCTCAGACGCAGCACCAAATGGAGTGTCATGACTTCTTTTGAATGTTGTAGTCTG 346486 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | | | || | | |||||| || ||||| ||||||||||| ||||| | || Sbjct 346487 CAAGTGTCCTCCCATCCGCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGG 346546 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGA-CGCCTCC 48716 ||| | ||||| || ||||||| ||| ||| | | | ||||| | |||| Sbjct 346547 GAATG-CCTCCCTG-----AATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTTCTCC 346600 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || || || || || || || || || || |||||||| Sbjct 346601 ACTTCCAATGTGATGGTCTTCCCTGTTAAGGTCTTGACGAAGATCTGCAT 346650 >seq268 Length=6919517 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||||||||||| ||| |||| |||| || | ||| || ||||| || Sbjct 3332304 TCCTTCTGTATATTGTAATCAGCTAGGGTTCGTCCGTCCTCGAGCTGTTTCCCGGCGAAA 3332363 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||| ||||||| |||| ||||||||||| |||||| || ||| Sbjct 3332364 ATCAATCGCTGCTGATCCGGCGGAATACCCTCCTTGTCTTGAATCTTAGCCTTGACATTG 3332423 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||| | |||||||| || || ||||| ||||| || Sbjct 3332424 TCGATCGTATCGGAGCTCTCGACCTCGAGAGTAATCGTCTTACCAGTCAAGGTTTTCACG 3332483 Query 48756 AAAATCTGCATC 48767 || ||||||||| Sbjct 3332484 AAGATCTGCATC 3332495 >seq1576 Length=5940209 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || || ||||||| ||| | | | || ||||||||| Sbjct 2985576 TGCAGGGTGGACTCTTTCTGGATGTTATAATCAGCCAGAGTCCTTCCATCTTCCAACTGC 2985635 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| | ||| || || | || | ||||||||||| |||||| Sbjct 2985636 TTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTG 2985695 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || |||||||||| ||||| || ||||| ||| Sbjct 2985696 GCCTTCACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAAGTAATGGTCTTTCCAGTC 2985755 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || ||||||||||||||| Sbjct 2985756 AGGGTCTTCACAAAAATCTGCATC 2985779 >seq1421 Length=9127415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||||| || || ||| || || |||||||| || | | Sbjct 1343406 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 1343465 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| ||||| || ||||| | |||||| || | |||| Sbjct 1343466 AGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 1343525 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | | || || ||| ||| Sbjct 1343526 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATTGTGTCGGAGCTCTCAACC 1343585 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||||| || || |||||||| Sbjct 1343586 TCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 1343632 >seq1361 Length=2134540 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || |||||||| || | || | || | || || | ||| Sbjct 1711089 ATGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCAAGTGTGCGCCCATCCTCGAGCTG 1711030 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||||||||| | ||| ||||| | |||| || |||||||| |||||| Sbjct 1711029 CTTGCCAGCAAATATCAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1710970 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || ||||| ||||||||||| || || || || || || Sbjct 1710969 AGCCTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAGAGTGATGGTCTTCCCTGT 1710910 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 1710909 AAGGGTCTTGACAAAGATCTGCAT 1710886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| ||||| || || | || | || | || || | |||||| || ||||| Sbjct 1709481 CTCCTTTTGGATATTATAGTCTGCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCAAA 1709422 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||||||||||||||| | |||| || ||||| || || ||| || ||| Sbjct 1709421 AATCAGTCGCTGTTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTTGCCTTAACATT 1709362 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||| || ||||| || | ||| ||||| Sbjct 1709361 ATCAATGGTATCGGAACTCTCAACCTCAAGAGTAATAGTCTTTCCAGTAAGAGTCTTTAC 1709302 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 1709301 AAAGATCTGCATC 1709289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380921731330014