Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2159 86.0 1e-11 >seq2159 Length=5030845 Score = 86.0 bits (94), Expect = 1e-11 Identities = 171/249 (69%), Gaps = 7/249 (3%) Strand=Plus/Plus Query 150402 TTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTA 150461 |||| || || || ||||| |||||| | | ||||| || ||||||||||| || | || Sbjct 671920 TTGGAGAGCCCGGGGTTGGGAAAACAGCAGTTGTTGAAGGCTTAGCACAACGGATTGTTA 671979 Query 150462 ATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCAT 150521 |||||||||||| | | | |||||| | || | | ||| ||||||| |||| Sbjct 671980 GAGGTGATGTTCCAAGTAATCTTGCTGATGTTAGACTTATAGCATTGGATATGGGAGCAT 672039 Query 150522 TTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACA 150579 | ||||| | |||||| | ||||| || ||||| | || || | | | ||| | Sbjct 672040 TGGTGGCTGGAGCGAAGTATAGAGGTGAGTTTGAAGAGAGGCTGAAGGC--TGTTCTAAA 672097 Query 150580 AGAACTAAAAGAA--CGC-GATGATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 |||| | | ||| || | | || ||||| ||||| |||||||| ||| || | Sbjct 672098 AGAAGTTGAGGAAGCAGCAGGGAAAGTGATTCTCTTCATTGATGAAATACATTTGGTTTT 672157 Query 150637 GGGTGCTGG 150645 ||| ||||| Sbjct 672158 GGGGGCTGG 672166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147540143430164