Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3418 627 1e-174 seq3417 246 3e-60 seq2647 239 5e-58 seq2653 233 2e-56 seq1564 190 2e-43 seq2036 93.3 5e-14 >seq3418 Length=161897 Score = 627 bits (694), Expect = 1e-174 Identities = 732/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 1556 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1497 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| || | | ||| | || || || || || |||||||| || |||||| Sbjct 1496 ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCCA 1437 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || || || ||||| || Sbjct 1436 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAATATT 1377 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 |||||||||||| | |||| | ||| ||||| ||| | ||||| || || || ||| Sbjct 1376 ATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAATTTGG 1317 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||||| || || || || |||| |||| | || | Sbjct 1316 GAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTA 1257 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 1256 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1197 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| |||||||||||| || || || | || || ||| || Sbjct 1196 GGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTT 1137 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| |||| || ||||||| || ||| ||||| | |||||||| || || ||| Sbjct 1136 TTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 1077 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| || | |||| | || ||||| || ||||||||||| || |||||||| || Sbjct 1076 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTT 1017 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 |||||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 1016 CATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 957 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | | ||||| ||||| || || | || || ||| | ||||| Sbjct 956 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTAC 897 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| || Sbjct 896 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 837 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| |||||||||||| ||||| | ||||||||| | ||||| Sbjct 836 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCT 777 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | |||||||||||||| | ||| | ||||||||||||||||| Sbjct 776 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTA 717 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 ||||||||||| |||||||||||||| ||||| ||| || || ||| |||| Sbjct 716 AACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGT---GTAATTAATACT 660 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| |||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 659 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 600 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || |||||||| || ||||| |||||| Sbjct 599 CATAACTTCCCTCTAGACCTAGCTGCT 573 >seq3417 Length=265768 Score = 246 bits (272), Expect = 3e-60 Identities = 249/323 (77%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 163166 TCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGA 163225 |||| ||||| ||| | ||||| || || || ||||||||| || ||||| || |||| Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 163226 TCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCC 163285 ||||||| ||||| |||||||||||| ||||| | ||||||||| | ||||| | | Sbjct 156150 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGC 156091 Query 163286 CTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACG 163345 |||| || | |||||||||||||| | ||| | ||||||||||||||||| || | Sbjct 156090 CTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATG 156031 Query 163346 GTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGG 163402 ||| || |||||||||||||| ||||| | ||| | || ||| ||||||| Sbjct 156030 GTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCG---CGTAATTAAGACTTGGG 155974 Query 163403 CAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACA 163462 | |||||| ||||| | || |||||||||||||||||||| || ||||||||||| | Sbjct 155973 CTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATA 155914 Query 163463 ACTTCCCACTTGACCTTGCTGCT 163485 ||||||| || ||||| |||||| Sbjct 155913 ACTTCCCTCTAGACCTAGCTGCT 155891 >seq2647 Length=4788780 Score = 239 bits (264), Expect = 5e-58 Identities = 291/394 (74%), Gaps = 2/394 (1%) Strand=Plus/Minus Query 162917 CTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTA 162976 |||| ||||| |||| || |||| || || ||| ||||| | |||||||| || | Sbjct 734482 CTGTTTTCTTA-TCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 734424 Query 162977 TTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACC 163036 | ||| ||||||| || | |||| | || ||||| | ||||||||||| || ||||||| Sbjct 734423 TCTCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACC 734364 Query 163037 CCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACG 163096 | ||||||||||| || || || |||||||||| || || || || |||| |||||| | Sbjct 734363 CATTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATG 734304 Query 163097 GTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACG 163156 |||| | || | |||| | | ||||| ||||| | | | || || ||| | | Sbjct 734303 GTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAG 734244 Query 163157 GTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTG 163216 |||| || ||||| ||||| ||||| |||| || || || | || |||||| || |||| Sbjct 734243 GTTACAAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTTTG 734185 Query 163217 GTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTG 163276 | || ||||||||| | ||||| |||||||||||| ||||| | ||||||||| | | Sbjct 734184 GCCGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAG 734125 Query 163277 CTGCATTCCCTGTGGTCTGCATCTGGTTCACTGC 163310 |||| | | ||| | | |||||||||||||| Sbjct 734124 CTGCTTGGCTTGTAGCAGGTATCTGGTTCACTGC 734091 Score = 129 bits (142), Expect = 6e-25 Identities = 127/163 (78%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGT 163380 ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||| Sbjct 733756 ACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGTCAAGGC 733697 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| ||||||||| |||||| ||||| || ||||||||||||||| Sbjct 733696 CGT---GTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAGTT 733640 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 163483 ||||| || ||||||||| |||||||| || ||||| |||| Sbjct 733639 ATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGCTG 733597 >seq2653 Length=4899193 Score = 233 bits (258), Expect = 2e-56 Identities = 286/390 (73%), Gaps = 9/390 (2%) Strand=Plus/Plus Query 162872 CTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCT 162931 ||||||| |||||||||||| || || || | || || ||| || |||||| ||| Sbjct 3225432 CTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCT 3225491 Query 162932 ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTA 162991 | || ||||||| || ||| ||||| | |||||||| || || ||||||||||| | Sbjct 3225492 ACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 3225551 Query 162992 ACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAA--------TGCACCCCTTCCA 163043 | | |||| | || ||||| || |||||||||| || | ||||||| || || Sbjct 3225552 ATT-CATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCA 3225610 Query 163044 TATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCT 163103 |||| | || || || ||||||||||| || || || || ||||||||||| ||||| | Sbjct 3225611 TATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTT 3225670 Query 163104 TGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAA 163163 || |||||| | | |||| ||||| || || | || | ||| | ||||| | Sbjct 3225671 GGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAG 3225730 Query 163164 GTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTT 163223 ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| || || Sbjct 3225731 ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATT 3225790 Query 163224 GATCTTCCAGTATGCATCTTTCAACAACTC 163253 |||||| || ||||| |||||||||||| Sbjct 3225791 GATCTTTCAATATGCTAGTTTCAACAACTC 3225820 >seq1564 Length=1404973 Score = 190 bits (210), Expect = 2e-43 Identities = 265/371 (71%), Gaps = 3/371 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 141179 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATA 141120 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 141119 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 141060 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || ||||| || |||||||||||| | |||| | ||| ||||| || Sbjct 141059 CTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAAGT 141000 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || || |||||||| ||| | ||||||| ||||| || || || || Sbjct 140999 TTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGT 140940 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 140939 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 140880 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | |||||||| |||||||| |||||||||||| || || Sbjct 140879 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCT 140820 Query 162901 GTATCTGCAGC 162911 || |||||| Sbjct 140819 GT---TGCAGC 140812 >seq2036 Length=7432206 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 162985 ACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCAT 163044 ||||| || | |||| | || ||||| || |||||||||| || | |||||| || ||| Sbjct 2690559 ACTTTCAATTTCATGATTGTATTCCAGGCCAAGCACAACATTCTTACGCACCCATTTCAT 2690500 Query 163045 ATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTC 163100 ||| | || || || |||||||||| ||| | || || ||||||||||| ||||| Sbjct 2690499 ATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTCTATTCAGTGCTATGCATGGTTC 2690444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553061169451920