Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq179 118 2e-21 >seq179 Length=2504955 Score = 118 bits (130), Expect = 2e-21 Identities = 381/584 (65%), Gaps = 13/584 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| || || || | ||||||||| || || || ||| | | | || ||| Sbjct 2366422 TAGAGCAAGCATGCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAG 2366481 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | | || ||||| | || | || ||| |||||||| || || ||| || Sbjct 2366482 AAGGACAACCCCGGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCG 2366541 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| ||||| || || || || | | ||| |||| || | | Sbjct 2366542 GAGAAGAAGATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGATTC---C 2366598 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | | |||||| || ||||| | |||||||||| | || |||| || || Sbjct 2366599 GAGCCATCAATCCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCA 2366658 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || |||| | | | | ||| | | ||| | || || | ||| Sbjct 2366659 ATCGCGTGGAACAACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGA 2366718 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||||||||| | |||||| || ||||||||||| ||||| || || | ||| Sbjct 2366719 CTGTACATCTCAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCC 2366778 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 || ||||| || || | ||| | ||| || |||||||| || || || || Sbjct 2366779 TCCGCAACCTGGACCTCCTTCATGAA-CCGTCCGGCGAGATTCTCCAAAACGATGCCGTC 2366837 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || ||||| |||||||| | || |||| || || ||||| | ||| || || Sbjct 2366838 GGAGGCGGCAAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGC 2366897 Query 48601 ATTCCAGCCCTGTACG----TCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 |||| | ||| ||| || | || || || || ||| | |||||||| |||| Sbjct 2366898 -TTCC--CACTG-ACGGAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACG 2366953 Query 48657 CGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGTCTATC 48700 ||| ||||| |||||||| |||| || | ||| || || ||| Sbjct 2366954 CGACGGCTTTCTTGTACATCTCCCAGATTTGCGGGTACTCAATC 2366997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931493000261120