Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq179 109 1e-18 >seq179 Length=2504955 Score = 109 bits (120), Expect = 1e-18 Identities = 370/569 (65%), Gaps = 13/569 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || |||||| || || ||| ||||||| Sbjct 2366981 ATCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTC 2366922 Query 25537 GCCAAGGA-CATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTA 25595 | |||| | | | | ||| | || ||| || |||||| |||| ||| | ||| | Sbjct 2366921 TCTCAGGATCTCCGTCAG-TGGGAAGCCCTAACCTCCGACGAGAAGCACTTTATTAAGCA 2366863 Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 | | | || || ||||| ||||| || || || || |||||||| || | || Sbjct 2366862 CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT 2366803 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || | ||| || ||| | |||||| | | |||| ||||| |||||||| ||||||| Sbjct 2366802 CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTT-TACGGATTCCAGATCGCCATCG 2366744 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG 25771 | ||| | ||||||||| |||| || |||||| | ||| ||||| | || | Sbjct 2366743 AGAATATCCACTCTGAGATGTA---CAGTCTTCTGTTGGAGACTTACATCAAGGATTCTG 2366687 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||| || || |||| || || || | ||| | | ||| |||||| Sbjct 2366686 AAGAGAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTA 2366627 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| | ||||| | || | | | || | ||||| || | |||| Sbjct 2366626 AGTGGGCTCTCCGCTGGATTGATGGCTCG---GAATCATTCGCTGAGCGTTTGTTGGCCT 2366570 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||||| ||| ||||| ||||| ||| ||| ||| ||||| |||||||| || Sbjct 2366569 TTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAA 2366510 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || ||||| ||| ||| ||| || || ||| | ||| | || ||||| Sbjct 2366509 AGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCT 2366450 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | ||| | ||||| || ||| |||||||| Sbjct 2366449 TGCACTGCGATTTCGCATGCTTGCTCTAC 2366421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928805115105920