Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3418 556 4e-154 seq1564 228 2e-55 seq2653 181 3e-41 seq2647 178 4e-40 seq3417 167 7e-37 seq2036 105 2e-18 >seq3418 Length=161897 Score = 556 bits (616), Expect = 4e-154 Identities = 723/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 570 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 629 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTAC 17947 ||||||||| | ||| | | |||||||| ||| | || | ||| | | || Sbjct 630 AAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAAC 689 Query 17948 AATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGA 18007 | |||||||||||| ||||| || || || || || ||||||||| ||| || | || Sbjct 690 TACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGC 749 Query 18008 GGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-T 18066 || | ||| || | || ||||||||||| |||||||| |||| || | | | Sbjct 750 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTA-ACGAACGAGAGT 808 Query 18067 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATAT 18126 |||| || |||||||| |||||||| | || ||||| || |||||||| || || |||| Sbjct 809 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATAT 868 Query 18127 TATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCG 18186 |||| || ||||| ||||| || ||| | || || | ||| ||| ||| || || | Sbjct 869 TATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGG 928 Query 18187 TTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 |||| || || | ||||| || | || ||||||||| ||||| | || | Sbjct 929 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGC 988 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 ||||||| || || || || | |||||| || || |||||||| || ||||| || || | Sbjct 989 CGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCT 1048 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAAC 18366 ||||||| | |||||||||||||||||| || || ||||||||||||||||| |||| Sbjct 1049 GGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAAC 1108 Query 18367 TCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAA 18425 | || || || | || || | | ||||| |||| | |||||||| || || || || Sbjct 1109 TTCCCTGACCGATTGGGTAGATCAAGAAA-ACTGCGGTAGCAGCTGCAACAGGAGCTGAG 1167 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| ||||||||||| || | ||||||||||||| | || ||| Sbjct 1168 TATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 1227 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 |||||| || | || | | ||||| | ||||| |||| ||| || || ||||| Sbjct 1228 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTG 1287 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| || || | || ||| |||||||| |||||||| ||||| | ||| || || Sbjct 1288 TATAACCATTCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCT 1347 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | ||| | || || || || || || |||||||| || || | | ||| || Sbjct 1348 GCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAA 1407 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 ||||| |||||||||||||| || || || ||||||||||||| || || || | |||| Sbjct 1408 ACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAAT 1467 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || |||||| || | | ||||||||| | || |||||||| || | ||| || Sbjct 1468 ACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1527 Query 18786 CGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 ||||| | || || || | ||||| ||| |||| Sbjct 1528 CGGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 1561 >seq1564 Length=1404973 Score = 228 bits (252), Expect = 2e-55 Identities = 273/371 (74%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 |||||||| || || || || || |||||| |||||| ||||||||||| || | || Sbjct 140809 GCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 140868 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||||||| || | || | | ||||| | ||||| Sbjct 140869 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 140928 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 |||| ||| || || ||||| |||||||| || || | || ||| |||||||| |||||| Sbjct 140929 AGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCCCAAATTGGG 140988 Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644 || ||||| | || || || ||| | ||| | || || || || || || ||||| Sbjct 140989 TAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATAATATTGTTC 141048 Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704 || || |||| | ||| || ||||| |||||||||||||| || || || ||||||||| Sbjct 141049 CCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 141108 Query 18705 GCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACC 18764 |||| || || || | |||| | | || |||||| || | | ||||||||| | || Sbjct 141109 GCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 141168 Query 18765 CCAAACCACCC 18775 |||||||| || Sbjct 141169 CCAAACCATCC 141179 >seq2653 Length=4899193 Score = 181 bits (200), Expect = 3e-41 Identities = 277/392 (71%), Gaps = 11/392 (3%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| || ||||| | || ||||| || |||||||| || || ||| Sbjct 3225817 TTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 3225758 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 ||||| || ||||| ||||| || ||| | || || | ||| | | ||| || || Sbjct 3225757 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTGTG 3225698 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 ||||| | || | ||||| || | || ||||||||| ||||| | || Sbjct 3225697 GTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 3225638 Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGA--------TATTGT 18297 |||||||| || || || || | |||||| || || |||||||| | | |||| Sbjct 3225637 CCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTTGT 3225578 Query 18298 GTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCAT 18357 | | || |||||||| | |||||| ||||||||||| || || ||||||||||||| Sbjct 3225577 GCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACCAT 3225519 Query 18358 CAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACT 18416 |||| ||||| || || || | || || | | ||||| |||| | |||||||| || Sbjct 3225518 CAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAA-ACTGCGGTAGCAGCTGCAACA 3225460 Query 18417 GGTGCGGAATAAGCAACACAAATCCACGGGCG 18448 || || || || |||||| |||||| | ||| Sbjct 3225459 GGAGCTGAGTATGCAACAGCAATCCAAGAGCG 3225428 >seq2647 Length=4788780 Score = 178 bits (196), Expect = 4e-40 Identities = 263/366 (72%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 18031 GCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGTTAAAGCTAGCATACTGGAAG 18089 |||||||||| |||||||| |||| || | | ||||| || |||||||| | |||| Sbjct 734116 GCCAAGCAGCTAAGAAGAAGTGTA-ACGAACGAGAGTTGTTGAAACTAGCATATTAGAAG 734174 Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCA 18149 || | || ||||| || |||||| | | || |||||||| | ||||| ||||| || Sbjct 734175 ATCAATCGGCCAAAATAACCATGAACAACTACGATATTATAAGG-TCTTCCTCTTGACCG 734233 Query 18150 AATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT-AAGTGAGGAAGT 18208 ||||| || || | ||| ||| ||| | | ||||| || || || || || | Sbjct 734234 AATTTGTAACCTTCGTTAGCAGATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATT 734293 Query 18209 AACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAG 18268 | |||| || |||||| || ||||| | || |||||||| | || || || | Sbjct 734294 ACCAAGGAA-CCATGCATAACACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTAT 734352 Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328 ||||||||| || |||||||| || ||||| || | |||||||| | |||||||||||| Sbjct 734353 CATATGGAATGGGTGCATAAGAATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAA 734412 Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAAC 18388 ||||| || || ||||||||||||||||| ||||| || || || | || || | Sbjct 734413 AGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGAT 734472 Query 18389 GAGAAA 18394 ||||| Sbjct 734473 AAGAAA 734478 Score = 86.0 bits (94), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||||||| ||||||||| || ||||||||||| | |||||||| Sbjct 733598 AGCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTT 733657 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| ||| | | |||||||| ||| | || | ||| | | | |||| Sbjct 733658 AGCATGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACA-- 733715 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGT 17992 ||||||||||| ||||| || || || || || |||||||| Sbjct 733716 -GATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGT 733756 >seq3417 Length=265768 Score = 167 bits (184), Expect = 7e-37 Identities = 234/323 (72%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 155888 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 155947 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCT-GCTA 17946 ||||||||| | ||| | | |||||||| || | || | ||| ||| | | Sbjct 155948 AAGGTTAGCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCT-TGGCTATCAA 156006 Query 17947 CAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAG 18006 | | |||||||||||| || | ||||| || || || ||||||||| ||| || | || Sbjct 156007 CTACGGATTGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAG 156066 Query 18007 AGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA- 18065 || | ||| || | || ||||||||||| |||||||| |||| || | | Sbjct 156067 CAGTGAACCAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTA-ACGAACGAGAG 156125 Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || |||||| || || ||| Sbjct 156126 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATA 156185 Query 18126 TTATACGTCTCTTCTTCTTGGCC 18148 ||||| || | ||| ||||| || Sbjct 156186 TTATAAGTTTATTCCTCTTGACC 156208 >seq2036 Length=7432206 Score = 105 bits (116), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| || ||| ||||||| || || ||||| |||||||| || Sbjct 2690447 CCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGAAAT 2690506 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGT 18331 || ||| |||| || ||||| | ||| |||||||| | ||||||||||||||| Sbjct 2690507 GGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGT 2690559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151312258175292