Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3418 509 5e-140 seq2653 185 3e-42 seq3417 183 9e-42 seq1564 179 1e-40 seq2647 167 7e-37 >seq3418 Length=161897 Score = 509 bits (564), Expect = 5e-140 Identities = 705/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 577 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 636 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || |||||||| || || || || | || | | | | | | ||| Sbjct 637 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGAT 696 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || |||||||| || | |||||| ||||| || | || | |||| ||| Sbjct 697 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 756 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| | ||||| || | ||| || || || || Sbjct 757 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 816 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| || ||||| ||||| Sbjct 817 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 876 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | ||| || | | ||| || || || | Sbjct 877 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 936 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 937 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 996 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || || || | ||| ||||| || ||||||||||| ||||||||||||||||| || Sbjct 997 CCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 1056 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| | ||||| || || || || || | |||||| ||||||||||| ||||| Sbjct 1057 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 1116 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 || | || || | | ||| || || || ||||| || |||||||| ||||| |||||| Sbjct 1117 CCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAACA 1176 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||||||| | Sbjct 1177 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1236 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | |||| | |||||||||||||| | |||| Sbjct 1237 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCAT 1296 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || ||||||||||||||||| ||||||| || || || | || Sbjct 1297 TCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAGAAGTC 1356 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | || || || || || ||||| || || | ||| || |||| || ||||| Sbjct 1357 GGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAGGTTCA 1416 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| ||||| |||||||| || || Sbjct 1417 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTT 1476 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| | | | || ||||| | || || |||||||| | ||||||||||| | Sbjct 1477 GCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1535 Query 22430 AGTAGAGGTGACCCAGGAACAAAA 22453 ||| ||| | |||| ||| || Sbjct 1536 AGTGCTGGTTATCCAGTTACAGAA 1559 >seq2653 Length=4899193 Score = 185 bits (204), Expect = 3e-42 Identities = 274/388 (71%), Gaps = 9/388 (2%) Strand=Plus/Minus Query 21699 GAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACA 21758 || || || || ||||||||||| ||||| | || |||||||| || |||||||| || Sbjct 3225820 GAGTTGTTGAAACTAGCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 3225761 Query 21759 ATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCA 21818 ||||| ||||| |||||||||||||| || ||||||| | ||| | | | ||| Sbjct 3225760 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCT 3225701 Query 21819 GTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTC 21878 || || || || | || || |||| | ||| ||||||||| ||| | Sbjct 3225700 GTGGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 3225641 Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAA--------TAT 21930 || || ||||| || || || || | ||| ||||| || |||||||||| | | Sbjct 3225640 CCGCCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGT 3225581 Query 21931 TGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAG 21990 |||||| ||||||||| || | |||| | ||||| || || || || || | |||||| Sbjct 3225580 TGTGCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATAC 3225522 Query 21991 CATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGA 22050 ||||||||||| ||||| || | || || | | ||| || || || ||||| || | Sbjct 3225521 CATCAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAA 3225462 Query 22051 CAGGAGCAGAGTACGCAACAAAGATCCA 22078 ||||||| ||||| |||||| ||||| Sbjct 3225461 CAGGAGCTGAGTATGCAACAGCAATCCA 3225434 >seq3417 Length=265768 Score = 183 bits (202), Expect = 9e-42 Identities = 229/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 155895 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 155954 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || |||||||| || || || || | || | | | | | ||| Sbjct 155955 GCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTATCAACTACGGAT 156014 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || || ||||||| | |||||| ||||| || | || | |||| ||| Sbjct 156015 TGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 156074 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || ||||| || |||||||| ||||| | ||||| || | ||| || || || || Sbjct 156075 CAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 156134 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| |||||||| || ||||| ||||| Sbjct 156135 CTAGCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTATAAGTT 156194 Query 21771 TCTTCCTCTTGACC 21784 | |||||||||||| Sbjct 156195 TATTCCTCTTGACC 156208 >seq1564 Length=1404973 Score = 179 bits (198), Expect = 1e-40 Identities = 270/381 (71%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 22032 ACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCT 22091 || || || ||||| || |||||||| ||||| |||||| ||||| || | ||| || Sbjct 140800 ACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCC 140859 Query 22092 AGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGG 22151 || || | |||||||||||||| || ||||||||| | || |||| | |||||| Sbjct 140860 AGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGT 140919 Query 22152 AATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCC 22211 | || | |||| | |||||||||||||| | ||||||||||| | || |||||| Sbjct 140920 AGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCC 140979 Query 22212 CAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATG 22271 ||||||||||| ||||||| | || || | |||||| | || || || || Sbjct 140980 CAAATTGGGTAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATA 141039 Query 22272 ATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACA 22331 || ||||| || || | || || |||| || ||||| || || ||||| || || || Sbjct 141040 ATATTGTTCCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACT 141099 Query 22332 GGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAAT 22390 || || || ||| ||||| |||||||| || || |||| ||| | | | || || Sbjct 141100 GGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTA-GGGAT 141158 Query 22391 CATAAGGACTCCGAACCATCC 22411 ||| | || || |||||||| Sbjct 141159 CATCAAAACACCAAACCATCC 141179 >seq2647 Length=4788780 Score = 167 bits (184), Expect = 7e-37 Identities = 275/394 (70%), Gaps = 2/394 (1%) Strand=Plus/Plus Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| |||||| | ||| |||| ||||| | ||||| || | ||| || Sbjct 734091 GCAGTGAACCAGATACCTGCTACAAGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAG 734150 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || |||||||||| |||||| | || |||||||| || ||| || | || ||| Sbjct 734151 TTGTTGAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCATGAACAACTACGATA 734210 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 || |||| |||||||||||||| || |||||||| | ||| || | | || | Sbjct 734211 TTATAAGG-TCTTCCTCTTGACCGAATTTGTAACCTTCGTTAGCAGATTCATTTTTTTTG 734269 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || || | || | || | |||| | ||| |||||| || ||| | || Sbjct 734270 GTTTCCCTGATCAAACTAGAAATTACCAAGGAACCATGCATAACACTGAATAGGGAGCCG 734329 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || ||||| | || || || | ||| || || || ||||||||||| ||||||||| || Sbjct 734330 CCGAATACACTAGCTACGCCTATCATATGGAATGGGTGCATAAGAATGTTGTGCTCAACC 734389 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| | ||||| || | || || || | |||||| ||||||||||| Sbjct 734390 TGGAATACAATCATGAAATTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAA 734449 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAG 22035 ||||| || | || || | || ||| |||| Sbjct 734450 CTTCCCTGGCCGATTGGGTAGATAA-GAAAACAG 734482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202065600040