Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2704 129 7e-25 seq179 127 2e-24 seq418 104 3e-17 seq207 86.0 7e-12 >seq2704 Length=3870086 Score = 129 bits (142), Expect = 7e-25 Identities = 301/449 (67%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| || | ||| | |||||||| | | || | ||| || ||||| Sbjct 2119559 GAGGTGGTGGAGTTCTTGAAGAAGCCCGAGAGGTTTACTGCAGTTGGAGCACGCATCCCT 2119500 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||||| ||| || ||||| || |||||||| || ||| |||||| Sbjct 2119499 AAAGGAGTTCTTCTCGTCGGTCCTCCGGGTACCGGGAAGACCCTACTAGCCAAAGCCATA 2119440 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 ||||||||| | ||| || ||| || || | || | | | ||||| |||||||| Sbjct 2119439 GCGGGTGAAGCCGGTGTTCCTTTCTTCTCAATT-TCGGGTTCGGAGTTTGTTGAGATGTT 2119381 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 |||||| || ||||| | || || || || || | | ||| ||||| || Sbjct 2119380 TGTTGGCGTTGGTGCATCTCGTGTCCGTGACCTTTTCAAGAAAGCCAAGGAAAACGCTCC 2119321 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT 175529 || ||||| || | ||||| ||||| || || || |||| | | | || | | Sbjct 2119320 CTGCATTGTATTTGTCGATGAAATTGACGCTGTTGGGCGGCAAAGAGGAACCGG-GATTG 2119262 Query 175530 GCC-AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 || || |||||||||||||| ||||| |||| ||||| || || || ||||| || | Sbjct 2119261 GCGGAGGGAATGACGAGAGAGAGCAAACTCTTAACCAACTCCTGACGGAAATGGACGGTT 2119202 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648 | || | || || ||| | |||||||| ||||||||||| | ||||| || || Sbjct 2119201 TCGAAGGAAACACCGGAATTATAGTTATTGCCGCCACTAATCGTGCTGATATTCTCGACT 2119142 Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 ||| | | | || ||||| |||||| Sbjct 2119141 CAGCCTTGTTGAGGCCTGGTCGGTTTGAT 2119113 >seq179 Length=2504955 Score = 127 bits (140), Expect = 2e-24 Identities = 185/259 (71%), Gaps = 13/259 (5%) Strand=Plus/Minus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCA---GTTATTTGAAGCCATCCAAACTGTACCA 65013 ||||| |||||| |||||| ||||| | ||| || | || || | ||||| || Sbjct 2366702 TACATCAAGGAT---TCTGAAGAGAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCC 2366646 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCT 65071 ||| | ||||||||||| || ||||| | ||| |||| | |||| || | Sbjct 2366645 TGTGTGGAGAAGAAGGCTAAGTGGGCTCTCCGCTGGATTGAT-----GGCTCGGAATCAT 2366591 Query 65072 TCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCT 65131 |||| ||||| | || || ||||| ||||| ||||| ||||||||||||||| || | Sbjct 2366590 TCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTTT 2366531 Query 65132 GCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAAC 65191 | || || | ||| |||| ||||| ||||| ||||| || | | |||||| ||||| Sbjct 2366530 GTGCCATATTCTGGCTGAAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGAGT 2366471 Query 65192 TTATTTCCCGAGATGAGGG 65210 | || || ||||||||||| Sbjct 2366470 TGATCTCGCGAGATGAGGG 2366452 >seq418 Length=2515040 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 || |||| ||||| || ||| |||||| ||||||||||||| | | || |||| || Sbjct 418557 CGAGACTTTGATTATGATTATTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTCTTGAA- 418615 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 || || | || | | |||||| ||||| ||||||| ||| | || | | || | Sbjct 418616 GGTTC-AGGGGAAAGTTGTGGAAAGGCCACAACACATGTTGATGAGAGTTTCTGTTGGGA 418674 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 ||||| | | || ||||| |||| | | ||||||| || |||||| ||||| || Sbjct 418675 TCCACAAGAATGATATTGAATCTGCCATCAGGACATACCACTTGATGTCTCAAGGATGGT 418734 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| ||| || | ||||| || || |||||||| || ||||| || ||| Sbjct 418735 TCACTCATGCTTCTCCAACACTTTTTAATGCTGGAACTCCAAGGCCCCAG 418784 >seq207 Length=1184981 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || || || |||| |||| | || ||| || | || ||||||||| | ||||||||| Sbjct 1013212 TTTTGTGCCATTTTTTGGCTTAAAAAGAGGTGCCTAATGCCAGGCTTGGCATTCTCAAAT 1013153 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 |||||||||||| ||||||||||||| ||| || |||||| Sbjct 1013152 GAACTTATTTCCAGAGATGAGGGTCTACACTGTGACTTTGCC 1013111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596544111563840