Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3418 556 2e-153 seq2653 235 7e-57 seq2647 217 2e-51 seq1564 172 7e-38 seq3417 165 1e-35 seq2036 96.9 4e-15 >seq3418 Length=161897 Score = 556 bits (616), Expect = 2e-153 Identities = 710/975 (73%), Gaps = 2/975 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 577 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 636 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 637 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACGGAT 696 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || ||||| ||||| |||||||| |||| ||||| | || ||| ||| Sbjct 697 TGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 756 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| | ||||||||| | | | |||||| ||| Sbjct 757 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 816 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || ||||||||||| || |||||||| || Sbjct 817 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGT 875 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | ||| ||| || | ||| || || || || Sbjct 876 TTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCT 935 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 936 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 995 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| |||||| || || |||||||||||||| ||||| || |||||||| Sbjct 996 ACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 1055 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | |||||| || || |||||||| || ||||||||||| |||||||| || ||||| Sbjct 1056 AATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 1115 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||| | ||| || | ||||| |||||| |||||| | || ||||| ||||| || Sbjct 1116 ACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAAC 1175 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || | |||||| | ||| | | ||||||| | |||||||||| Sbjct 1176 AGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACA 1235 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | || | | ||| ||||| ||||| || ||||| Sbjct 1236 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCA 1295 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | || ||||||||||| || || |||||||| || ||||| |||| Sbjct 1296 TTCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCAGAAGT 1355 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | |||||||||||| || |||||||| || | | || || | ||||||||| Sbjct 1356 CGGAATAATAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCAGAAACAGGTTC 1415 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || ||||||||||| || || | ||||| || || Sbjct 1416 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGT 1475 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 || | || || ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 1476 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1535 Query 8850 TGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1536 AGTGCTGGTTATCCA 1550 >seq2653 Length=4899193 Score = 235 bits (260), Expect = 7e-57 Identities = 286/387 (74%), Gaps = 11/387 (3%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| || ||||| |||| ||||| || ||||||||||| || | Sbjct 3225818 GTTGTTGAAACTA-GCATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGA 3225760 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 ||||||| || ||||| |||||||| || | ||||| | ||| | | || | ||| | Sbjct 3225759 TATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCATATTCATTTTCTG 3225700 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | || || |||| | | ||| || || || ||||| |||||||||||||| || || | Sbjct 3225699 TGGTTTCCTTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGC 3225640 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCA--------TAAGAATGTT 8351 | ||||| | ||| ||||| ||| |||||| || || |||| |||||||||| Sbjct 3225639 CGCCGAATACACCAGCTACGCCTAACATATGAAATGGGTGCATAAGAAATTAAGAATGTT 3225580 Query 8352 ATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCC 8411 |||| || |||||||| | |||||| || || |||||||| || ||||||||||| || Sbjct 3225579 GTGCTTAGCCTGGAATACAATCATGAA-TTGAAAGTACCAGAGATTCCTAGAGGCATACC 3225521 Query 8412 ATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATAC 8471 |||||| || |||||||| | ||| || | ||||| |||||| |||||| | || Sbjct 3225520 ATCAGAAAAACTTCCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAAC 3225461 Query 8472 TGGAGCACTATATGCTACACAGATCCA 8498 ||||| ||||| ||| ||||| Sbjct 3225460 AGGAGCTGAGTATGCAACAGCAATCCA 3225434 >seq2647 Length=4788780 Score = 217 bits (240), Expect = 2e-51 Identities = 296/408 (73%), Gaps = 4/408 (1%) Strand=Plus/Plus Query 8047 GTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAG 8106 |||| ||||| | || ||| ||||| | || | | || | | | ||| | ||||||| Sbjct 734076 GTGCTGATACCTAAAGCAGTGAACCAGATACCTGCTACAAGCCAAGCAGCTAAGAAGAAG 734135 Query 8107 TGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCC 8165 || | | | |||||| |||| | ||||| | |||||| |||| ||||| || || Sbjct 734136 TGTAACGAACGAGAGTTGTTGAAACTA-GCATATTAGAAGATCAATCGGCCAAAATAACC 734194 Query 8166 ATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTG 8225 |||| || | || |||||||| | ||||| |||||||| || || ||||| | ||| Sbjct 734195 ATGAACAACTACGATATTATAAGG-TCTTCCTCTTGACCGAATTTGTAACCTTCGTTAGC 734253 Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 ||| || | || | || || ||||| | | ||| | || || ||||| |||||| | Sbjct 734254 AGATTCATTTTTTTTGGTTTCCCTGATCAAACTAGAAATTACCAAGGAACCATGCATAAC 734313 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 |||||| || || || ||||| | || ||||| ||| ||||||||| || |||||||| Sbjct 734314 ACTGAATAGGGAGCCGCCGAATACACTAGCTACGCCTATCATATGGAATGGGTGCATAAG 734373 Query 8346 AATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGG 8405 |||||| ||||| | |||||||| | |||||| || || |||| ||| || |||||||| Sbjct 734374 AATGTTGTGCTCAACCTGGAATACAATCATGAAATTGAAAGTACTAGAGATTCCTAGAGG 734433 Query 8406 CATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACAC 8453 ||| |||||||| || ||||| || | ||| || | |||||| || Sbjct 734434 CATACCATCAGAAAAACTTCCCTGGCCGATTGGGTAGA-TAAGAAAAC 734480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| | ||||| | ||||||||||||||||||||| | ||| Sbjct 733599 GCTAGGTCTAGAGGGAAGTTACGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 733658 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || || ||||| | ||| |||| ||| ||| | || | | ||||| || || Sbjct 733659 GC-ATGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAATTACAGA 733717 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGT 8048 |||||| || || || ||||| ||||| |||||||| || Sbjct 733718 TTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAGT 733756 >seq1564 Length=1404973 Score = 172 bits (190), Expect = 7e-38 Identities = 266/380 (70%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 8452 ACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCT 8511 |||||| |||||| | || ||||| ||||| ||| ||||| || | |||||| Sbjct 140800 ACTGCGGTAGCAGCTGCAACAGGAGCTGAGTATGCAACAGCAATCCAAGGGCGCATACCC 140859 Query 8512 AAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGG 8571 | ||| | | ||||||| | |||||||||| || | |||| | |||||| Sbjct 140860 AGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGT 140919 Query 8572 AAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCC 8631 | | || | | ||| ||||| ||||| || ||||| ||||| | | || |||||| Sbjct 140920 AGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCCGCTTCC 140979 Query 8632 CAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATG 8691 ||||| || || |||||||| | ||||| |||| |||| | |||||||||||| Sbjct 140980 CAAATTGGGTAAAAGTGTAAACTTATAGCTGCAGAAGTCGGAATAATAGCACCAGAGATA 141039 Query 8692 ATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACA 8751 || ||||| || || | | || || | |||||||||||||||||| || ||||| || Sbjct 141040 ATATTGTTCCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACT 141099 Query 8752 GGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATC 8811 || ||||||||||| || || | ||||| || || || | || || ||| ||| Sbjct 141100 GGAGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATC 141159 Query 8812 ATTAGAACTCCAAACCAACC 8831 || | ||| |||||||| || Sbjct 141160 ATCAAAACACCAAACCATCC 141179 >seq3417 Length=265768 Score = 165 bits (182), Expect = 1e-35 Identities = 227/315 (72%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 155895 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 155954 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | || | |||||| || ||| Sbjct 155955 GCACGGTTAATGATATCAGCCCAAGTCTTAATTACGCGGCCTTGGCTATCAACTACGGAT 156014 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || | || || ||||| |||||||| |||| ||||| | || ||| ||| Sbjct 156015 TGGTTGAAATTTCAACCATTTAGGTTGAATGCCATAGTGCTGATACCTAAAGCAGTGAAC 156074 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || || || || | | ||| | ||||||||| | | | |||||| ||| Sbjct 156075 CAGATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 156134 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || ||||||||| || |||||||| || Sbjct 156135 CTA-GCATATTGGAAGATCAATCGGCCAAAATAATTATGAGCAGCTACGATATTATAAGT 156193 Query 8190 CTCTTCTTCTTGACC 8204 | ||| |||||||| Sbjct 156194 TTATTCCTCTTGACC 156208 >seq2036 Length=7432206 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 8272 GAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGG 8331 ||||| |||||||||||||| || | ||| |||| | ||| ||||| ||| |||||| Sbjct 2690444 GAACCATGCATAGCACTGAATAGAGGGCCATCGAATACACCAGCTACACCTAGCATATGA 2690503 Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGT 8387 || || ||| |||||||||| |||| || |||||||| | |||||| || || || Sbjct 2690504 AATGGGTGCGTAAGAATGTTGTGCTTGGCCTGGAATACAATCATGAAATTGAAAGT 2690559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615836087278960