Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3418 509 5e-140 seq2653 185 3e-42 seq3417 183 9e-42 seq1564 179 1e-40 seq2647 167 7e-37 >seq3418 Length=161897 Score = 509 bits (564), Expect = 5e-140 Identities = 705/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 1559 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1500 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | | | ||| |||| || || |||||||| ||||| ||| || || Sbjct 1499 ATGATCCC-TACTTTATTGACCGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCC 1441 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || ||| | || || ||||| Sbjct 1440 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTACGGAAACAA 1381 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || || | |||||| | || || || ||||||| |||||||| Sbjct 1380 TATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTTTTACCCAAT 1321 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||| || | ||||||||||| | |||||||||||||| | |||| | || Sbjct 1320 TTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 1261 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | |||||| | |||| || | ||||||||| || |||||||||||||| | || Sbjct 1260 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1201 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| ||||| |||||||| || ||||| || || Sbjct 1200 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGC 1141 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 || ||| | | || || | || ||||| ||||||||||| |||||| | || || Sbjct 1140 AGTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1081 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||| | |||| | || ||||||||||||||||| ||||||||||| || Sbjct 1080 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 1021 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||| ||| | || || || || ||||| || || | ||| ||||||||| || Sbjct 1020 ATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 961 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || ||| | || Sbjct 960 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 901 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 900 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 841 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || || || ||| | || ||||| | || Sbjct 840 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGC 781 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 ||| |||||||| |||||||| ||||| |||| | || | || ||||| ||||| Sbjct 780 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAA 721 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | || |||||||| || |||||||| | | | | | | || | || || || || Sbjct 720 CCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 661 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| || |||||||||| |||||||| | || || |||||||| || || || Sbjct 660 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 601 Query 42193 ACACAACTTCCCGCTTGACCTTGC 42216 || |||||||| || ||||| || Sbjct 600 TCATAACTTCCCTCTAGACCTAGC 577 >seq2653 Length=4899193 Score = 185 bits (204), Expect = 3e-42 Identities = 274/388 (71%), Gaps = 9/388 (2%) Strand=Plus/Plus Query 41609 TGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTAT 41668 ||||| |||||| ||||| |||||||| || ||||| || || || ||| | | || Sbjct 3225434 TGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTAC 3225493 Query 41669 CCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAAC 41728 || | || ||||| ||||||||||| |||||| | || || || || || ||||| Sbjct 3225494 CCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA- 3225552 Query 41729 TACATGCTGGTGTTCCAGGCTGAGCACAATA--------TTCTTATGCATCCTTTTCACA 41780 | |||| | || ||||||||| ||||||| | |||||||||| || ||||| | Sbjct 3225553 TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCATA 3225612 Query 41781 TGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGG 41840 || | || || || || ||||| || || | ||| ||||||||| ||| | ||| Sbjct 3225613 TGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 3225672 Query 41841 TCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGT 41900 | || || | || || || || ||| | | | ||| | ||||||| | Sbjct 3225673 TAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAGAT 3225732 Query 41901 TTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTA 41960 | |||||||||||||| ||||| ||||| || |||||||| || |||||||| || | | Sbjct 3225733 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 3225792 Query 41961 TCTTCCAATATGCTAGCTTTAATAATTC 41988 |||| ||||||||||| || || || || Sbjct 3225793 TCTTTCAATATGCTAGTTTCAACAACTC 3225820 >seq3417 Length=265768 Score = 183 bits (202), Expect = 9e-42 Identities = 229/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 41903 GGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATC 41962 |||||||||||| | ||||| ||||| || |||||||| |||||||| || | ||| Sbjct 156208 GGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGATC 156149 Query 41963 TTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCT 42022 |||||||||||||| || || || || ||| | || ||||| | ||||| |||||| Sbjct 156148 TTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGGCCT 156089 Query 42023 GTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGT 42082 || || ||||| ||||| |||| | || | || ||||| |||||| | |||||| Sbjct 156088 GTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAATGGT 156029 Query 42083 TTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGAC 42142 | || || |||||||| | | | | | || | || || || || |||||||| Sbjct 156028 TGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCTGAT 155969 Query 42143 ATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTC 42202 || |||||||||| |||||||| | || || |||||||| || || || || |||||| Sbjct 155968 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 155909 Query 42203 CCGCTTGACCTTGC 42216 || || ||||| || Sbjct 155908 CCTCTAGACCTAGC 155895 >seq1564 Length=1404973 Score = 179 bits (198), Expect = 1e-40 Identities = 270/381 (71%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 41276 GGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTAT 41334 |||||||| || || | ||||| || | | | ||| |||| || || |||||||| Sbjct 141179 GGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAACTTCTGTATTTATTAT 141121 Query 41335 CGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTC 41394 ||||| ||| || || || || || || ||||| || || ||||| || |||| || Sbjct 141120 AGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 141061 Query 41395 CCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGG 41454 || | || || ||||| || || || || || | |||||| | || || | Sbjct 141060 TCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAAG 141001 Query 41455 ACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGG 41514 ||||||| ||||||||||||||||| || | ||||||||||| | ||||||||||| Sbjct 141000 TTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGG 140941 Query 41515 TCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGA 41574 ||| | |||| | || | |||||| | |||| || | ||||||||| || || Sbjct 140940 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 140881 Query 41575 GTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCC 41634 |||||||||||| | || || || ||| | || ||||| |||||| ||||| ||||| Sbjct 140880 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCC 140821 Query 41635 TGTCGCCGCTGCGACTGCTGT 41655 ||| || ||||| || || || Sbjct 140820 TGTTGCAGCTGCTACCGCAGT 140800 >seq2647 Length=4788780 Score = 167 bits (184), Expect = 7e-37 Identities = 275/394 (70%), Gaps = 2/394 (1%) Strand=Plus/Minus Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711 |||| ||| || | || || | || ||||| ||||||||||| |||||| | || | Sbjct 734482 CTGTTTTC-TTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 734424 Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771 | || | || ||||| | |||| | || ||||||| ||||||||| ||||||||||| | Sbjct 734423 TCTCTAGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACC 734364 Query 41772 CTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACG 41831 | || || ||| | || || || | ||||| || || | ||| || |||||| | Sbjct 734363 CATTCCATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATG 734304 Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATG 41891 || | |||| | || | || | || || | || | | || ||| | | Sbjct 734303 GTTCCTTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAG 734244 Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951 ||||||| || |||||||||||||| |||| ||||| || | || ||| || ||||||| Sbjct 734243 GTTACAAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTTTG 734185 Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011 | || | |||||| |||||||||| || || || || ||| | || ||||| | | Sbjct 734184 GCCGATTGATCTTCTAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAG 734125 Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGC 42045 |||| |||| ||| | |||||| ||||| |||| Sbjct 734124 CTGCTTGGCTTGTAGCAGGTATCTGGTTCACTGC 734091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146208465340272