Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3418 547 2e-151 seq3417 199 1e-46 seq2653 190 6e-44 seq2647 188 2e-43 seq1564 183 9e-42 seq2036 84.2 6e-12 >seq3418 Length=161897 Score = 547 bits (606), Expect = 2e-151 Identities = 721/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 1568 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1509 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| | || ||||| Sbjct 1508 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATAGCCTTCAT 1450 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || || Sbjct 1449 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTGCTTTA 1390 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || ||||||||||| | | || | | || || || |||| || Sbjct 1389 CGGAAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATAGGTTTACACTT 1330 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| || |||| |||||| | ||||| ||||| |||||| | Sbjct 1329 TTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 1270 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 1269 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 1210 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| ||||| || ||||| || || Sbjct 1209 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGC 1150 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || || ||||| ||| | |||| ||| | || || || |||||| ||||| ||||| Sbjct 1149 TGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCC 1090 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| ||||| |||||| | || ||||||||||| || |||||||| Sbjct 1089 TCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATTCT 1030 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || |||||| | || || || || ||||| || || || | ||| || Sbjct 1029 TATGCACCCATTTCATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 970 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 969 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 910 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 || | || |||| |||||||||||||| || |||||||| || || || || ||||| Sbjct 909 TAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGG 850 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || || ||| || || |||| Sbjct 849 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTTACACT 791 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || || ||||||||| || | || |||| |||| Sbjct 790 TCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 731 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | || ||||| || || |||||||| | ||||||| ||| | || Sbjct 730 TGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGCCGTG 671 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 670 TAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 611 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| ||||||||||| || || || || Sbjct 610 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 577 >seq3417 Length=265768 Score = 199 bits (220), Expect = 1e-46 Identities = 236/317 (74%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 42956 TCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTA 43015 ||||||||||||| | |||||||| || || || || ||| ||| ||||| || | | Sbjct 156210 TCGGTCAAGAGGAATAAACTTATAATATCGTAGCTGCTCATAATTATTTTGGCCGATTGA 156151 Query 43016 TCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGG 43074 ||||||||||||| | |||| || || ||| || || |||||||| | || |||||| Sbjct 156150 TCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGCTTGG 156092 Query 43075 CCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAAT 43134 || || ||||| || ||||||||| || | || |||| |||||||| || ||| | ||| Sbjct 156091 CCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCATTCAACCTAAAT 156032 Query 43135 GGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCT 43194 |||| || || |||||||| | ||||||| || | || || ||||||||| Sbjct 156031 GGTTGAAATTTCAACCAATCCGTAGTTGATAGCCAAGGCCGCGTAATTAAGACTTGGGCT 155972 Query 43195 GATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAAC 43254 ||||| | || ||||| |||||||| | || || ||||| || || ||||| |||||| Sbjct 155971 GATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 155912 Query 43255 TTCCCGCTTGATCTTGC 43271 ||||| || || || || Sbjct 155911 TTCCCTCTAGACCTAGC 155895 >seq2653 Length=4899193 Score = 190 bits (210), Expect = 6e-44 Identities = 266/373 (71%), Gaps = 9/373 (2%) Strand=Plus/Plus Query 42664 TGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTAT 42723 ||||| |||||| ||||| || ||||| || || || || ||||| ||| | |||| Sbjct 3225434 TGGATTGCTGTTGCATACTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTGATCTAC 3225493 Query 42724 CCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAAC 42783 ||| | || || || |||||| ||||| |||||||| || || || ||||| ||||| Sbjct 3225494 CCAATCGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA- 3225552 Query 42784 TTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTA--------TGCATCCTTTCCATA 42835 |||||| | || ||||||||| | || |||||||||| |||| || || |||| Sbjct 3225553 TTCATGATTGTATTCCAGGCTAAGCACAACATTCTTAATTTCTTATGCACCCATTTCATA 3225612 Query 42836 TGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTG 42895 || | || || || || ||||| || || || | ||| |||||||||||| | | Sbjct 3225613 TGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 3225672 Query 42896 TCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGT 42955 | || ||| | | | ||||| || ||||| ||| || | || |||| | Sbjct 3225673 TAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATATGCTAACGAAGGTTACAGAT 3225732 Query 42956 TCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTA 43015 ||||||||||||| || |||||||| || || || || |||||||| ||||| || | | Sbjct 3225733 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 3225792 Query 43016 TCTTCCAATATGC 43028 |||| |||||||| Sbjct 3225793 TCTTTCAATATGC 3225805 >seq2647 Length=4788780 Score = 188 bits (208), Expect = 2e-43 Identities = 290/410 (71%), Gaps = 3/410 (1%) Strand=Plus/Minus Query 42712 TTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCC 42771 || ||| |||| ||| | || || || |||||| ||||| |||||||| || || || Sbjct 734478 TTTCTTATCTACCCAATCGGCCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCT 734419 Query 42772 GGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTC 42831 |||| ||||| |||||| | || ||||||| ||| || |||||||||||||| || ||| Sbjct 734418 AGTACTTTCAATTTCATGATTGTATTCCAGGTTGAGCACAACATTCTTATGCACCCATTC 734359 Query 42832 CATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGT 42891 |||||| | || || || | ||||| || || || | ||| | |||||||||| Sbjct 734358 CATATGATAGGCGTAGCTAGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGTTCC 734299 Query 42892 CTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTAC 42951 | || | ||| | | | | ||||| | |||| ||| || | || ||| Sbjct 734298 TTGGTAATTTCTAGTTTGATCAGGGAAACCAAAAAAAATGAATCTGCTAACGAAGGTTAC 734239 Query 42952 AAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGG 43011 || |||||||||||||| || ||||||| || || | | |||||||| ||||| || Sbjct 734238 AAATTCGGTCAAGAGGAAGA-CCTTATAATATCGTAGTTGTTCATGGTTATTTTGGCCGA 734180 Query 43012 CTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGC 43070 | |||||| ||||||| | |||| || || ||| || || |||||||| | || || Sbjct 734179 TTGATCTTCTAATATGC-TAGTTTCAACAACTCTCGTTCGTTACACTTCTTCTTAGCTGC 734121 Query 43071 TTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGG 43120 ||||| || | || || ||||||||| || | || |||| |||| || Sbjct 734120 TTGGCTTGTAGCAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAGGG 734071 Score = 100 bits (110), Expect = 8e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 43109 TCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATC 43168 ||||||||||||| || ||| | || ||||| || || |||||||| | |||||| || Sbjct 733761 TCAGTACTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAATTGATAGTC 733702 Query 43169 AGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGG 43228 | | ||| || ||||||||||||||| | || | ||| |||||||| | || | Sbjct 733701 AAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCATGCTAACCTTGGTATGGAAG 733642 Query 43229 TGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | ||||| || | ||||| | ||||||||| || || || || Sbjct 733641 TTATGCATGAATGTAATGCTCGTAACTTCCCTCTAGACCTAGC 733599 >seq1564 Length=1404973 Score = 183 bits (202), Expect = 9e-42 Identities = 272/383 (71%), Gaps = 2/383 (1%) Strand=Plus/Minus Query 42329 TTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATT 42387 |||| ||||||||||| ||||||| || | | | | || || | ||| |||||| Sbjct 141181 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATT 141123 Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447 | || ||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| Sbjct 141122 ATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 141063 Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATT 42507 ||||| || || || ||||| || ||||||||||| | | || | | || || Sbjct 141062 TCTCTACTTTACGGGAACAATATTATCTCTGGTGCTATTATTCCGACTTCTGCAGCTATA 141003 Query 42508 GGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGC 42567 | |||| || || | || |||||||| || |||| |||||| | ||||| ||| Sbjct 141002 AGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGC 140943 Query 42568 GGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGC 42627 || |||||| | || | || | |||||| | | ||| | | |||| |||| || Sbjct 140942 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 140883 Query 42628 GAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCC 42687 || ||||||||| | ||| || || ||| | || ||||| |||||| ||||| || Sbjct 140882 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATACTCAGCT 140823 Query 42688 CCTGTGGCTGCAGCGACTGCAGT 42710 ||||| || || || || ||||| Sbjct 140822 CCTGTTGCAGCTGCTACCGCAGT 140800 >seq2036 Length=7432206 Score = 84.2 bits (92), Expect = 6e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42775 ACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCAT 42834 || ||||| |||||| | || |||||||| | || |||||||||| ||| || || ||| Sbjct 2690559 ACTTTCAATTTCATGATTGTATTCCAGGCCAAGCACAACATTCTTACGCACCCATTTCAT 2690500 Query 42835 ATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 ||||| ||||| || || ||||| | ||| | | ||| |||||||||||| Sbjct 2690499 ATGCTAGGTGTAGCTGGTGTATTCGATGGCCCTCTATTCAGTGCTATGCATGGT 2690446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143526974183064